RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 CDCP2Q5VXM1 449 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 CES4AQ5XG92 561 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 ATG9BQ674R7 924 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 MILR1Q7Z6M3 343 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 SYVN1Q86TM6 617 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 PAQR7Q86WK9 346 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 ZNF740Q8NDX6 193 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 ZUFSPQ96AP4 578 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 CNDP1Q96KN2 507 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 FCRL4Q96PJ5 515 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 DEPDC7Q96QD5 511 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 SPNS1Q9H2V7 528 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 ZNF768Q9H5H4 540 aaKnown RBP16.49■□□□□ 0.23
LIME1-208ENST00000493265 ZNF395Q9H8N7 513 aaPredicted RBP16.49■□□□□ 0.23
LIME1-208ENST00000493265 FAM60AQ9NP50 221 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 PDE7BQ9NP56 450 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 PDP2Q9P2J9 529 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 CLCA2Q9UQC9 943 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 SMG1Q96Q15 3661 aaKnown RBP16.49■□□□□ 0.23
LIME1-208ENST00000493265 UBFD1O14562 309 aaKnown RBP16.48■□□□□ 0.23
LIME1-208ENST00000493265 FFAR3O14843 346 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 GPR42O15529 346 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 ITM2AO43736 263 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 OR1F1O43749 312 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 NPHS1O60500 1241 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 CTSVO60911 334 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 CRCPO75575 148 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 DKK1O94907 266 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 OR4F21O95013 312 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 CLDN9O95484 217 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 HSPA4LO95757 839 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 MLYCDO95822 493 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 OTCP00480 354 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 CHRNGP07510 517 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 EBLN1P0CF75 366 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 JUPP14923 745 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 HRH2P25021 359 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 CSTF2P33240 577 aaKnown RBP eCLIP16.48■□□□□ 0.23
LIME1-208ENST00000493265 GRK3P35626 688 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 SH3BP2P78314 561 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 ZFP36L1Q07352 338 aaKnown RBP16.48■□□□□ 0.23
LIME1-208ENST00000493265 TRAF3Q13114 568 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 RCN2Q14257 317 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 NAA25Q14CX7 972 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 C16orf72Q14CZ0 275 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 CPSF6Q16630 551 aaKnown RBP eCLIP16.48■□□□□ 0.23
LIME1-208ENST00000493265 ISXQ2M1V0 245 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 ARL13AQ5H913 290 aaPredicted RBP16.48■□□□□ 0.23
LIME1-208ENST00000493265 TMTC4Q5T4D3 741 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 ZNF425Q6IV72 752 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 FOXR1Q6PIV2 292 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 GPRIN3Q6ZVF9 776 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 ARHGAP22Q7Z5H3 698 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 ABHD11Q8NFV4 315 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 OR4F6Q8NGB9 312 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 AGR3Q8TD06 166 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 KLHL6Q8WZ60 621 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 N4BP2L2Q92802 583 aaPredicted RBP16.48■□□□□ 0.23
LIME1-208ENST00000493265 PTCD3Q96EY7 689 aaKnown RBP16.48■□□□□ 0.23
LIME1-208ENST00000493265 TCTN2Q96GX1 697 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 AIF1LQ9BQI0 150 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 STRADBQ9C0K7 418 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 DRC3Q9H069 523 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 MANSC1Q9H8J5 431 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 GEMIN8Q9NWZ8 242 aaKnown RBP16.48■□□□□ 0.23
LIME1-208ENST00000493265 FIS1Q9Y3D6 152 aa16.48■□□□□ 0.23
LIME1-208ENST00000493265 SNRNP200O75643 2136 aaKnown RBP16.48■□□□□ 0.23
LIME1-208ENST00000493265 URB1O60287 2271 aaKnown RBP16.47■□□□□ 0.23
LIME1-208ENST00000493265 OR2A25A4D2G3 310 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 TRABD2BA6NFA1 517 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 TOX3O15405 576 aaPredicted RBP16.47■□□□□ 0.23
LIME1-208ENST00000493265 SERPIND1P05546 499 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 ANKRD34CP0C6C1 535 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 PCNAP12004 261 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 NELFEP18615 380 aaKnown RBP16.47■□□□□ 0.23
LIME1-208ENST00000493265 CD22P20273 847 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 ARRB2P32121 409 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 ERVPABLB-1P60509 514 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 ABCE1P61221 599 aaKnown RBP16.47■□□□□ 0.23
LIME1-208ENST00000493265 BST1Q10588 318 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 TRA2AQ13595 282 aaKnown RBP eCLIP16.47■□□□□ 0.23
LIME1-208ENST00000493265 GPR19Q15760 415 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 HIST2H2ACQ16777 129 aaPredicted RBP16.47■□□□□ 0.23
LIME1-208ENST00000493265 TTC19Q6DKK2 380 aaPredicted RBP16.47■□□□□ 0.23
LIME1-208ENST00000493265 HIST2H2AA3Q6FI13 130 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 LETMD1Q6P1Q0 360 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 TRIM42Q8IWZ5 723 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 LSMEM2Q8N112 164 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 CARFQ8N187 725 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 KRT78Q8N1N4 520 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 GALNT15Q8N3T1 639 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 CDYL2Q8N8U2 506 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 LRRC8CQ8TDW0 803 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 ZNF75CPQ92670 426 aaPredicted RBP16.47■□□□□ 0.23
LIME1-208ENST00000493265 RNF31Q96EP0 1072 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 SLC41A2Q96JW4 573 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 KCNA7Q96RP8 456 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 ZNF382Q96SR6 550 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 EFCAB11Q9BUY7 163 aa16.47■□□□□ 0.23
LIME1-208ENST00000493265 IRAK4Q9NWZ3 460 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms