RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 GABRR3A8MPY1 467 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 ARHGEF33A8MVX0 844 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 NPIPB8E9PQR5 432 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 MT-ND2P03891 347 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 HOXB6P17509 224 aaKnown RBP17.35■□□□□ 0.37
VIM-206ENST00000487938 PSMB9P28065 219 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 MASP1P48740 699 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 PRMT2P55345 433 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 ACSM2AQ08AH3 577 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 KEAP1Q14145 624 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 EGFLAMQ63HQ2 1017 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 ACSM2BQ68CK6 577 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 TMC8Q8IU68 726 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 CHPT1Q8WUD6 406 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 ASZ1Q8WWH4 475 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 GLMNQ92990 594 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 FCRL1Q96LA6 429 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 DUSP26Q9BV47 211 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 SPG21Q9NZD8 308 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 FZD4Q9ULV1 537 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 PCDHGB1Q9Y5G3 927 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 SERTM1A2A2V5 107 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 NEDD8-MDP1E9PL57 170 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 GRM6O15303 877 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 FAM20BO75063 409 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 JUNDP17535 347 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 PREPP48147 710 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 OCA2Q04671 838 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 RGS21Q2M5E4 152 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 HKDC1Q2TB90 917 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 CCDC71Q8IV32 467 aaPredicted RBP17.35■□□□□ 0.37
VIM-206ENST00000487938 GPR156Q8NFN8 814 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 OR8J2Q8NGG1 315 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 ZNF347Q96SE7 839 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 APOL4Q9BPW4 351 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 CORO1BQ9BR76 489 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 ALOXE3Q9BYJ1 711 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 ASPSCR1Q9BZE9 553 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 REEP1Q9H902 201 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 SGK2Q9HBY8 427 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 PCDHB11Q9Y5F2 797 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 DOCK6Q96HP0 2047 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 PDE4DIPQ5VU43 2346 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 JRKO75564 520 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 DNAJB5O75953 348 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 LRG1P02750 347 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 CSTF3Q12996 717 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 POM121L1PQ3SYA9 428 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 ZDHHC20Q5W0Z9 365 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 ERICH5Q6P6B1 374 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 DDX53Q86TM3 631 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 SNX29P2Q8IUI4 249 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 PGBD3Q8N328 593 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 C1orf52Q8N6N3 182 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 OR4K3Q96R72 315 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 RIOK2Q9BVS4 552 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 PALMDQ9NP74 551 aa17.34■□□□□ 0.37
VIM-206ENST00000487938 SPATA6Q9NWH7 488 aaPredicted RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 FAM120CQ9NX05 1096 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 CHCHD3Q9NX63 227 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 THUMPD1Q9NXG2 353 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 NDRG4Q9ULP0 352 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 RUVBL1Q9Y265 456 aaKnown RBP17.34■□□□□ 0.37
VIM-206ENST00000487938 CLDN25C9JDP6 229 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 M0R3G1 203 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 ABCB1P08183 1280 aaPredicted RBP17.33■□□□□ 0.37
VIM-206ENST00000487938 ACPPP15309 386 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 GSSP48637 474 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 RPP38P78345 283 aaKnown RBP17.33■□□□□ 0.37
VIM-206ENST00000487938 RAE1P78406 368 aaKnown RBP17.33■□□□□ 0.37
VIM-206ENST00000487938 CLCA4Q14CN2 919 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 MAD2L1BPQ15013 274 aaPredicted RBP17.33■□□□□ 0.37
VIM-206ENST00000487938 ACOX1Q15067 660 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 AGTRAPQ6RW13 159 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 SYNPOQ8N3V7 929 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 OR2A12Q8NGT7 310 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 ZFP90Q8TF47 636 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 SELENONQ9NZV5 590 aa17.33■□□□□ 0.37
VIM-206ENST00000487938 SOBPA7XYQ1 873 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 FADS2P1A8MWK0 482 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 KPNA5O15131 536 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 GABARAPO95166 117 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 ANXA4P09525 319 aaPredicted RBP17.33■□□□□ 0.36
VIM-206ENST00000487938 ACVR2AP27037 513 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 BDKRB1P46663 353 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 CRYBA2P53672 197 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 POLR2LP62875 67 aaKnown RBP17.33■□□□□ 0.36
VIM-206ENST00000487938 DEFB103AP81534 67 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 CREMQ03060 361 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 CYP2A13Q16696 494 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.33■□□□□ 0.36
VIM-206ENST00000487938 CPTPQ5TA50 214 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 TMEM236Q5W0B7 351 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 Q6ZPB1 254 aaPredicted RBP17.33■□□□□ 0.36
VIM-206ENST00000487938 GPR155Q7Z3F1 870 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 YIPF6Q96EC8 236 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 DEFB118Q96PH6 123 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 EMILIN2Q9BXX0 1053 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 MTG2Q9H4K7 406 aa17.33■□□□□ 0.36
VIM-206ENST00000487938 COL4A6Q14031 1691 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms