RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CCR3P51677 355 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 CLDN15P56746 228 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 IFI35P80217 286 aaPredicted RBP3.14□□□□□ -1.91
VPS41-213ENST00000485955 RASGEF1BQ0VAM2 473 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 TRAP1Q12931 704 aaKnown RBP3.14□□□□□ -1.91
VPS41-213ENST00000485955 TRA2AQ13595 282 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS41-213ENST00000485955 FAM189A2Q15884 450 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 SLC25A30Q5SVS4 291 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 OR4A47Q6IF82 309 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 METTL4Q8N3J2 472 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 TC2NQ8N9U0 490 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 SLC4A11Q8NBS3 891 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 CHPT1Q8WUD6 406 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 PIK3R3Q92569 461 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 SECISBP2LQ93073 1101 aaKnown RBP3.14□□□□□ -1.91
VPS41-213ENST00000485955 MOB3AQ96BX8 217 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 GAL3ST4Q96RP7 486 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 MAP3K3Q99759 626 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 CPNE1Q99829 537 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 APOL6Q9BWW8 343 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 NYXQ9GZU5 481 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 DNAJC4Q9NNZ3 241 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 NSMCE4AQ9NXX6 385 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 SWAP70Q9UH65 585 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 CHORDC1Q9UHD1 332 aaPredicted RBP3.14□□□□□ -1.91
VPS41-213ENST00000485955 CPSF3Q9UKF6 684 aaKnown RBP3.14□□□□□ -1.91
VPS41-213ENST00000485955 ZNF510Q9Y2H8 683 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 WIPI2Q9Y4P8 454 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 WDR97A6NE52 1622 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 MAP3K4Q9Y6R4 1608 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 CFTRP13569 1480 aa3.14□□□□□ -1.91
VPS41-213ENST00000485955 BCORL1Q5H9F3 1711 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 CEP350Q5VT06 3117 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 IGKV6D-41A0A0C4DH26 115 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 GLTPD2A6NH11 291 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 A8MXK9 166 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 CCER2I3L3R5 266 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 PSMD10O75832 226 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 KRT33AO76009 404 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 ABCB1P08183 1280 aaPredicted RBP3.13□□□□□ -1.91
VPS41-213ENST00000485955 PRKAR1AP10644 381 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 BDNFP23560 247 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 AZGP1P25311 298 aaKnown RBP3.13□□□□□ -1.91
VPS41-213ENST00000485955 ELAVL4P26378 380 aaKnown RBP3.13□□□□□ -1.91
VPS41-213ENST00000485955 NNMTP40261 264 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 IRX4P78413 519 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 PTPRCAPQ14761 206 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 MAPRE1Q15691 268 aaKnown RBP3.13□□□□□ -1.91
VPS41-213ENST00000485955 LETM2Q2VYF4 491 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 NOTUMQ6P988 496 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 ZBTB49Q6ZSB9 765 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 FAM43BQ6ZT52 329 aaPredicted RBP3.13□□□□□ -1.91
VPS41-213ENST00000485955 ZFAND4Q86XD8 727 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 HPS6Q86YV9 775 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 ABHD12Q8N2K0 398 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 POM121L12Q8N7R1 296 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 AVL9Q8NBF6 648 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 C9orf43Q8TAL5 461 aaPredicted RBP3.13□□□□□ -1.91
VPS41-213ENST00000485955 MUS81Q96NY9 551 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 PANK2Q9BZ23 570 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 PRRG4Q9BZD6 226 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 RARRES3Q9UL19 164 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 TRPV2Q9Y5S1 764 aa3.13□□□□□ -1.91
VPS41-213ENST00000485955 RIMS1Q86UR5 1692 aaKnown RBP3.12□□□□□ -1.91
VPS41-213ENST00000485955 EDDM13A0A1B0GTR0 161 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 TCRBV21S2A2A0A5A6 115 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 ACOD1A6NK06 481 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 C2CD4DB7Z1M9 353 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 BCL2L11O43521 198 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 TADA2AO75478 443 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 ATP6AP2O75787 350 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 BAG3O95817 575 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 HPRP00739 348 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 ATP5BP06576 529 aaKnown RBP3.12□□□□□ -1.91
VPS41-213ENST00000485955 HSP90AA1P07900 732 aaKnown RBP3.12□□□□□ -1.91
VPS41-213ENST00000485955 SAGP10523 405 aaPredicted RBP3.12□□□□□ -1.91
VPS41-213ENST00000485955 FOLR2P14207 255 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 ITIH1P19827 911 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 ETV5P41161 510 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 LMAN1P49257 510 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 ASCL1P50553 236 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 PRKG2Q13237 762 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 SNTB1Q13884 538 aaKnown RBP3.12□□□□□ -1.91
VPS41-213ENST00000485955 NPTX1Q15818 432 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 SLC47A2Q86VL8 602 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 FAM89BQ8N5H3 189 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 ANKRD13CQ8N6S4 541 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 KCNE4Q8WWG9 221 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 OTUB1Q96FW1 271 aaPredicted RBP3.12□□□□□ -1.91
VPS41-213ENST00000485955 PI4K2AQ9BTU6 479 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 TMX4Q9H1E5 349 aaPredicted RBP3.12□□□□□ -1.91
VPS41-213ENST00000485955 PARLQ9H300 379 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 EGLN3Q9H6Z9 239 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 CTSZQ9UBR2 303 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 PRDM4Q9UKN5 801 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 TP53TG3Q9ULZ0 132 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 FAM169AQ9Y6X4 670 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 SETBP1Q9Y6X0 1596 aa3.12□□□□□ -1.91
VPS41-213ENST00000485955 RALGAPA1Q6GYQ0 2036 aa3.11□□□□□ -1.91
VPS41-213ENST00000485955 MTMR11A4FU01 709 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms