RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 UTP11Q9Y3A2 253 aaKnown RBP17.07■□□□□ 0.32
UPF3A-203ENST00000474056 ZNF451Q9Y4E5 1061 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 PCDHGB7Q9Y5F8 929 aa17.07■□□□□ 0.32
UPF3A-203ENST00000474056 FEZF1A0PJY2 475 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 PABPN1LA6NDY0 278 aaKnown RBP17.06■□□□□ 0.32
UPF3A-203ENST00000474056 CDC7O00311 574 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 FOXS1O43638 330 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 GUCA1CO95843 209 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 IGHEP01854 428 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 ZGLP1P0C6A0 271 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 CDH1P12830 882 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 CCND1P24385 295 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 HRH2P25021 359 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 PLTPP55058 493 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 MLLT10P55197 1068 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 AP1S2P56377 157 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 RPS15AP62244 130 aaKnown RBP17.06■□□□□ 0.32
UPF3A-203ENST00000474056 KCNC4Q03721 635 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 OCA2Q04671 838 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 KLC1Q07866 573 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 IGFBP7Q16270 282 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 VWA2Q5GFL6 755 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 GARNL3Q5VVW2 1013 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 CAPN13Q6MZZ7 669 aaPredicted RBP17.06■□□□□ 0.32
UPF3A-203ENST00000474056 CEP97Q8IW35 865 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 NKAPQ8N5F7 415 aaKnown RBP17.06■□□□□ 0.32
UPF3A-203ENST00000474056 OR56A3Q8NH54 315 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 FBXO25Q8TCJ0 367 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 MIEF2Q96C03 454 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 FBXL8Q96CD0 374 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 MVB12AQ96EY5 273 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 MMABQ96EY8 250 aaPredicted RBP17.06■□□□□ 0.32
UPF3A-203ENST00000474056 C16orf45Q96MC5 204 aaPredicted RBP17.06■□□□□ 0.32
UPF3A-203ENST00000474056 MESP1Q9BRJ9 268 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 CRB3Q9BUF7 120 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 TRIM54Q9BYV2 358 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 RAB17Q9H0T7 212 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 FBXL4Q9UKA2 621 aa17.06■□□□□ 0.32
UPF3A-203ENST00000474056 MRPS2Q9Y399 296 aaKnown RBP17.06■□□□□ 0.32
UPF3A-203ENST00000474056 IGLV3-12A0A075B6K2 115 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 A0A0A6YYC8 382 aaPredicted RBP17.05■□□□□ 0.32
UPF3A-203ENST00000474056 TCRBV9S1A1TA0A576 114 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 NPEPPSL1A6NEC2 478 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 I3L1I5 382 aaPredicted RBP17.05■□□□□ 0.32
UPF3A-203ENST00000474056 TXNDC9O14530 226 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 LCMT2O60294 686 aaKnown RBP17.05■□□□□ 0.32
UPF3A-203ENST00000474056 ENO2P09104 434 aaPredicted RBP17.05■□□□□ 0.32
UPF3A-203ENST00000474056 NPPBP16860 134 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 BCL6P41182 706 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 GPX6P59796 221 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 RBBP7Q16576 425 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 PPP1R3AQ16821 1122 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 KIRREL2Q6UWL6 708 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 ZDHHC24Q6UX98 284 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 AMER3Q8N944 861 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 ANKRD49Q8WVL7 239 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 NACC2Q96BF6 587 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 OR4K3Q96R72 315 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 MACROD1Q9BQ69 325 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 DRC3Q9H069 523 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 SEMA3GQ9NS98 782 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 CDC14AQ9UNH5 594 aa17.05■□□□□ 0.32
UPF3A-203ENST00000474056 NOVA2Q9UNW9 492 aaKnown RBP17.05■□□□□ 0.32
UPF3A-203ENST00000474056 RELNP78509 3460 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 PRPF4O43172 522 aaKnown RBP eCLIP17.04■□□□□ 0.326e-7■■■■□ 23.2
UPF3A-203ENST00000474056 C1QAP02745 245 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 ANXA5P08758 320 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 SLC26A3P40879 764 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 FOXK1P85037 733 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 MEF2AQ02078 507 aaPredicted RBP17.04■□□□□ 0.32
UPF3A-203ENST00000474056 DSG2Q14126 1118 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 MYBPC3Q14896 1274 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 NDUFA9Q16795 377 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 SYT16Q17RD7 645 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 VWA5B1Q5TIE3 1220 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 LAPTM4BQ86VI4 370 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 RBMXL3Q8N7X1 1067 aaKnown RBP17.04■□□□□ 0.32
UPF3A-203ENST00000474056 ATL1Q8WXF7 558 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 CDKL2Q92772 493 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 HAUS8Q9BT25 410 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 YIPF2Q9BWQ6 316 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 MFRPQ9BY79 579 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 PHACTR1Q9C0D0 580 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 ZNF552Q9H707 407 aaPredicted RBP17.04■□□□□ 0.32
UPF3A-203ENST00000474056 CAB39LQ9H9S4 337 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 GPAMQ9HCL2 828 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 ATP13A2Q9NQ11 1180 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 TRPC4Q9UBN4 977 aa17.04■□□□□ 0.32
UPF3A-203ENST00000474056 MTO1Q9Y2Z2 717 aaKnown RBP17.04■□□□□ 0.32
UPF3A-203ENST00000474056 KCNE1BA0A087WTH5 132 aa17.03■□□□□ 0.32
UPF3A-203ENST00000474056 ESYT3A0FGR9 886 aa17.03■□□□□ 0.32
UPF3A-203ENST00000474056 FAM159BA6NKW6 160 aa17.03■□□□□ 0.32
UPF3A-203ENST00000474056 DPM1O60762 260 aa17.03■□□□□ 0.32
UPF3A-203ENST00000474056 SLC7A5Q01650 507 aa17.03■□□□□ 0.32
UPF3A-203ENST00000474056 CAV1Q03135 178 aa17.03■□□□□ 0.32
UPF3A-203ENST00000474056 CKAP4Q07065 602 aaKnown RBP17.03■□□□□ 0.32
UPF3A-203ENST00000474056 AIMP2Q13155 320 aaKnown RBP17.03■□□□□ 0.32
UPF3A-203ENST00000474056 FAM53BQ14153 422 aa17.03■□□□□ 0.32
UPF3A-203ENST00000474056 TUBB8Q3ZCM7 444 aa17.03■□□□□ 0.32
UPF3A-203ENST00000474056 C3orf62Q6ZUJ4 267 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms