RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 RHCGQ9UBD6 479 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 CRLS1Q9UJA2 301 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 UGT2A1Q9Y4X1 527 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 CKAP5Q14008 2032 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 PTPRSQ13332 1948 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 CLIC1O00299 241 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 IDH3BO43837 385 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 OLFM2O95897 454 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 ACPPP15309 386 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 RRM2P31350 389 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 TUFMP49411 452 aaKnown RBP12.04□□□□□ -0.48
HDAC4-208ENST00000463007 CLCN7P51798 805 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 CAMK2GQ13555 558 aaPredicted RBP12.04□□□□□ -0.48
HDAC4-208ENST00000463007 BOP1Q14137 746 aaKnown RBP12.04□□□□□ -0.48
HDAC4-208ENST00000463007 NCEH1Q6PIU2 408 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 GPR149Q86SP6 731 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 ADAMTSL2Q86TH1 951 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 GPR156Q8NFN8 814 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 IGSF21Q96ID5 467 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 CAPNS2Q96L46 248 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 RMND5AQ9H871 391 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 RC3H2Q9HBD1 1191 aaKnown RBP12.04□□□□□ -0.48
HDAC4-208ENST00000463007 PCM1Q15154 2024 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 C2orf78A6NCI8 922 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 MANBAO00462 879 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 FPGTO14772 594 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 CLDN7O95471 211 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 IL6P05231 212 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 IFITM2Q01629 132 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 NPRL3Q12980 569 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 KIAA0040Q15053 153 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 Q6ZNB5 142 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 SVOPQ8N4V2 548 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 LMNTD1Q8N9Z9 388 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 VANGL1Q8TAA9 524 aaPredicted RBP12.04□□□□□ -0.48
HDAC4-208ENST00000463007 VMP1Q96GC9 406 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 TMEM184CQ9NVA4 438 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 RLIMQ9NVW2 624 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 PPT2Q9UMR5 302 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 PLXNB3Q9ULL4 1909 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 H3BM21 787 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 GUCY1B2O75343 617 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 NPPAP01160 153 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 HOXA9P31269 272 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 SLC19A1P41440 591 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 GANABQ14697 944 aaKnown RBP12.04□□□□□ -0.48
HDAC4-208ENST00000463007 NXNL2Q5VZ03 156 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 LRRC66Q68CR7 880 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 SLC44A2Q8IWA5 706 aaPredicted RBP12.04□□□□□ -0.48
HDAC4-208ENST00000463007 ZNF461Q8TAF7 563 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 KCNJ9Q92806 393 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 NEDD4LQ96PU5 975 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 P2RY12Q9H244 342 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 DUSP21Q9H596 190 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 NUDT4Q9NZJ9 180 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 LRFN2Q9ULH4 789 aa12.04□□□□□ -0.48
HDAC4-208ENST00000463007 HELZP42694 1942 aaKnown RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 LOC110117498-PIK3R3F6TDL0 507 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 GAPDHSO14556 408 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 WBP4O75554 376 aaKnown RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 BMPR1AP36894 532 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 CTSKP43235 329 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 RGS4P49798 205 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 CLCN4P51793 760 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 RHOAP61586 193 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ZNF177Q13360 481 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 COL9A2Q14055 689 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 SPANXN2Q5MJ10 180 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 KIAA1614Q5VZ46 1190 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ENTHD1Q8IYW4 607 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ZNF486Q96H40 463 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 FEVQ99581 238 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ADGRE3Q9BY15 652 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ITPAQ9BY32 194 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 PLSCR3Q9NRY6 295 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ADPRHL2Q9NX46 363 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 SH3BP4Q9P0V3 963 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 TNPO3Q9Y5L0 923 aaKnown RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 FAM47E-STBD1D6RA91 191 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 STK16O75716 305 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 WDR47O94967 919 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 LATS1O95835 1130 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 MZF1P28698 734 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 RYKP34925 604 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ACOX1Q15067 660 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 ARMCX4Q5H9R4 360 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 SYT6Q5T7P8 510 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 SHQ1Q6PI26 577 aaKnown RBP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 KLHL17Q6TDP4 642 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.03□□□□□ -0.48
HDAC4-208ENST00000463007 GDPD3Q7L5L3 318 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 SYT12Q8IV01 421 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 SCLYQ96I15 445 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 RDH12Q96NR8 316 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 IL4I1Q96RQ9 567 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 BTBD2Q9BX70 525 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 IMPAD1Q9NX62 359 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 SLC22A14Q9Y267 594 aa12.03□□□□□ -0.48
HDAC4-208ENST00000463007 YIPF1Q9Y548 306 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms