RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 CNTRLQ7Z7A1 2325 aa11.86□□□□□ -0.51
CPSF4-208ENST00000452047 KCNE1BA0A087WTH5 132 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 IDSB3KWA1 339 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 TCP11X1B4DZS4 312 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 TXNDC9O14530 226 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 FFAR3O14843 346 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 SLC16A5O15375 505 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 GPR42O15529 346 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 TTI1O43156 1089 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 PRPF4O43172 522 aaKnown RBP eCLIP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 SEC31AO94979 1220 aaKnown RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 ACPPP15309 386 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 FDXRP22570 491 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 HRH2P25021 359 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 VARSP26640 1264 aaKnown RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 EFNA3P52797 238 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 PGGT1BP53609 377 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 ITGA8P53708 1063 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 FAM53BQ14153 422 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 FRG1Q14331 258 aaKnown RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 HIF1AQ16665 826 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 ZXDCQ2QGD7 858 aaPredicted RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 HP1BP3Q5SSJ5 553 aaPredicted RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 AGTRAPQ6RW13 159 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 CUZD1Q86UP6 607 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 IQCKQ8N0W5 287 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 MYO1HQ8N1T3 1032 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 PPP4R1Q8TF05 950 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 TM9SF4Q92544 642 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 C8orf44Q96CB5 159 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 SNRNP40Q96DI7 357 aaKnown RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 C19orf60Q96EN9 201 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 MMABQ96EY8 250 aaPredicted RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 CFAP36Q96G28 342 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 OLFM1Q99784 485 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 SGPP1Q9BX95 441 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 LHPPQ9H008 270 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 PCBD2Q9H0N5 130 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 C14orf105Q9NVL8 296 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 CORO1CQ9ULV4 474 aaPredicted RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 MRPS2Q9Y399 296 aaKnown RBP11.85□□□□□ -0.51
CPSF4-208ENST00000452047 PCDHGA10Q9Y5H3 936 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 CPAMD8Q8IZJ3 1885 aa11.85□□□□□ -0.51
CPSF4-208ENST00000452047 A0A0A6YYC8 382 aaPredicted RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 CCDC188H7C350 402 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 I3L1I5 382 aaPredicted RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 MAP2K7O14733 419 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 HPP00738 406 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 STATHP02808 62 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 COX6A1P12074 109 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 RPS15AP62244 130 aaKnown RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 CSNK1G2P78368 415 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 PDAP1Q13442 181 aaKnown RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 NAE1Q13564 534 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 FASTKD3Q14CZ7 662 aaKnown RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 SYT16Q17RD7 645 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 HECTD2Q5U5R9 776 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 AGAP7PQ5VUJ5 663 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 ZC3H7AQ8IWR0 971 aaKnown RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 PARP9Q8IXQ6 854 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 PALM2Q8IXS6 379 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 ZADH2Q8N4Q0 377 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 SNF8Q96H20 258 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 VPS50Q96JG6 964 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 AGAP4Q96P64 663 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 PSMG3-AS1Q96PY0 264 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 BARD1Q99728 777 aaKnown RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 WDR77Q9BQA1 342 aaPredicted RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 ILKAPQ9H0C8 392 aaPredicted RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 ATG10Q9H0Y0 220 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 ZNF160Q9HCG1 818 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 MKKSQ9NPJ1 570 aaPredicted RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 PPANQ9NQ55 473 aaKnown RBP11.84□□□□□ -0.51
CPSF4-208ENST00000452047 PSAT1Q9Y617 370 aa11.84□□□□□ -0.51
CPSF4-208ENST00000452047 E7ESA3 106 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 NSA2O95478 260 aaKnown RBP11.83□□□□□ -0.52
CPSF4-208ENST00000452047 ANXA5P08758 320 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 NPPBP16860 134 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 CCND1P24385 295 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 BCL6P41182 706 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 EMP2P54851 167 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 AP1S2P56377 157 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 ARL4CP56559 192 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 IL2P60568 153 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 MAT1AQ00266 395 aaKnown RBP11.83□□□□□ -0.52
CPSF4-208ENST00000452047 CBLBQ13191 982 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 MRPL49Q13405 166 aaKnown RBP11.83□□□□□ -0.52
CPSF4-208ENST00000452047 NDUFA9Q16795 377 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 FAM45BPQ6NSW5 357 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 TMEM214Q6NUQ4 689 aaKnown RBP11.83□□□□□ -0.52
CPSF4-208ENST00000452047 LCTLQ6UWM7 567 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 PRSS41Q7RTY9 318 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 C17orf64Q86WR6 236 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 CISD2Q8N5K1 135 aaKnown RBP11.83□□□□□ -0.52
CPSF4-208ENST00000452047 GPATCH11Q8N954 259 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 OR9A4Q8NGU2 314 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 OR56A3Q8NH54 315 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 FAM45AQ8TCE6 357 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 TM4SF19Q96DZ7 209 aa11.83□□□□□ -0.52
CPSF4-208ENST00000452047 THAP11Q96EK4 314 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms