RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CHI3L2Q15782 390 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 PHKG1Q16816 387 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 CFAP157Q5JU67 520 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 ATG16L1Q676U5 607 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 CYHR1Q6ZMK1 362 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 PRSS42Q7Z5A4 293 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 TCAIMQ8N3R3 496 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 RAB42Q8N4Z0 105 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 AVL9Q8NBF6 648 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 PDPRQ8NCN5 879 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 CKAP2Q8WWK9 683 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 KLHL6Q8WZ60 621 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 TFGQ92734 400 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-208ENST00000437607 PHF21BQ96EK2 531 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 MAGEB18Q96M61 343 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 HGH1Q9BTY7 390 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 SLC40A1Q9NP59 571 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 ARL15Q9NXU5 204 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 PDE10AQ9Y233 779 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 POLHQ9Y253 713 aa11.7□□□□□ -0.54
PTPRF-208ENST00000437607 OR52A4PA6NMU1 304 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 TARM1B6A8C7 271 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 MKRN2OSH3BPM6 223 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 STX16-NPEPL1H3BU86 382 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 GFYI3L273 518 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 STX16O14662 325 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 DLX3O60479 287 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 TRIM13O60858 407 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 KATNA1O75449 491 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 DNAJB5O75953 348 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 SBK3P0C264 359 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 MTHFD1P11586 935 aaKnown RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 AMD1P17707 334 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 ACADLP28330 430 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 NDUFS1P28331 727 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 CAPZBP47756 277 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 UQCRFS1P47985 274 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 ALDH18A1P54886 795 aaKnown RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 GPR18Q14330 331 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 SETDB1Q15047 1291 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 PFKFB4Q16877 469 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 TUBB8Q3ZCM7 444 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 CDKL4Q5MAI5 379 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 TTC19Q6DKK2 380 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 HIST2H2BCQ6DN03 193 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 SULT1C3Q6IMI6 304 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 DUS1LQ6P1R4 473 aaKnown RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 ABRAXAS1Q6UWZ7 409 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 WASH2PQ6VEQ5 465 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 ZCCHC23Q6ZST2 131 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 FAM92BQ6ZTR7 304 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 RASGRP3Q8IV61 690 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 TRIM48Q8IWZ4 208 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 FBXO15Q8NCQ5 510 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 SPDYE1Q8NFV5 336 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 OR5K2Q8NHB8 316 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 CT55Q8WUE5 264 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 UBTD2Q8WUN7 234 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 ATL1Q8WXF7 558 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 CXorf40BQ96DE9 158 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 TMEM237Q96Q45 408 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 TRIM55Q9BYV6 548 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 AKIRIN1Q9H9L7 192 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 WASH6PQ9NQA3 447 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 OXSMQ9NWU1 459 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 WDR37Q9Y2I8 494 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 PCDHB3Q9Y5E6 796 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 PCDHGA6Q9Y5G7 932 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 CFAP20Q9Y6A4 193 aaKnown RBP11.69□□□□□ -0.54
PTPRF-208ENST00000437607 DOCK10Q96BY6 2186 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 NOTCH2Q04721 2471 aa11.69□□□□□ -0.54
PTPRF-208ENST00000437607 MYO9AB2RTY4 2548 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 IGHV5-51A0A0C4DH38 117 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 CDC14CA4D256 554 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 ZNF839A8K0R7 811 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 CREG1O75629 220 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 RASSF9O75901 435 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 C1orf105O95561 183 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 MTHFD2P13995 350 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 NELFEP18615 380 aaKnown RBP11.68□□□□□ -0.54
PTPRF-208ENST00000437607 GRK2P25098 689 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 EEF1DP29692 281 aaKnown RBP11.68□□□□□ -0.54
PTPRF-208ENST00000437607 HNMTP50135 292 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 DNAJB13P59910 316 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 NAA20P61599 178 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 HERVK_113P63132 956 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 DNASE1L3Q13609 305 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.68□□□□□ -0.54
PTPRF-208ENST00000437607 CACHD1Q5VU97 1274 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 CAPRIN2Q6IMN6 1127 aaKnown RBP11.68□□□□□ -0.54
PTPRF-208ENST00000437607 MBOAT1Q6ZNC8 495 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 ASB18Q6ZVZ8 466 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 TBC1D21Q8IYX1 336 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 TMEM151AQ8N4L1 468 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 CCNYL1Q8N7R7 359 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 TEX19Q8NA77 164 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 OR5AR1Q8NGP9 310 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 PPP4R1Q8TF05 950 aa11.68□□□□□ -0.54
PTPRF-208ENST00000437607 DLG3Q92796 817 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms