RNA–Protein interactions for RNA: ENST00000421756.5

MCF2L-213, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best) BASIC

Gene MCF2L, Length 3,560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-213ENST00000421756 RPS3P23396 243 aaKnown RBP eCLIP12.9□□□□□ -0.34
MCF2L-213ENST00000421756 SLBPQ14493 270 aaKnown RBP eCLIP12.9□□□□□ -0.34
MCF2L-213ENST00000421756 COQ5Q5HYK3 327 aa12.9□□□□□ -0.34
MCF2L-213ENST00000421756 TNFAIP8L2Q6P589 184 aaPredicted RBP12.9□□□□□ -0.34
MCF2L-213ENST00000421756 MEX3DQ86XN8 651 aaKnown RBP12.9□□□□□ -0.34
MCF2L-213ENST00000421756 CHDHQ8NE62 594 aaPredicted RBP12.9□□□□□ -0.34
MCF2L-213ENST00000421756 PIK3C3Q8NEB9 887 aa12.9□□□□□ -0.34
MCF2L-213ENST00000421756 RFXAPO00287 272 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 FAM20BO75063 409 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TULP3O75386 442 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 MAPK8P45983 427 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 SPCS2Q15005 226 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 DCP2Q8IU60 420 aaKnown RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TMCO5AQ8N6Q1 288 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 WDR48Q8TAF3 677 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 NXPE3Q969Y0 559 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 DUS3LQ96G46 650 aaKnown RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 FOPNLQ96NB1 174 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 NODALQ96S42 347 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 ASPSCR1Q9BZE9 553 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 POLE4Q9NR33 117 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 PAK1IP1Q9NWT1 392 aaPredicted RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 STOX2Q9P2F5 926 aaPredicted RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TRPS1Q9UHF7 1281 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 C3orf18Q9UK00 162 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CORINQ9Y5Q5 1042 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 SCN2AQ99250 2005 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 LOC100506127A0A0U1RQW1 187 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 FEZF1A0PJY2 475 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CATP04040 527 aaKnown RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CHI3L1P36222 383 aaPredicted RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 PRKAG1P54619 331 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 GAB1Q13480 694 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TTC23Q5W5X9 447 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 SPARTQ8N0X7 666 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CLIP4Q8N3C7 705 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 PACRGLQ8N7B6 248 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 FAM81AQ8TBF8 368 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TSPEARQ8WU66 669 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 RAB8BQ92930 207 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 FUNDC2Q9BWH2 189 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 KRT84Q9NSB2 600 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TRBV5-4A0A0C4DH59 114 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TBC1D3BA6NDS4 549 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TLL1O43897 1013 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 RECQL5O94762 991 aaPredicted RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 PCDH8O95206 1070 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CRHBPP24387 322 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 PSMB5P28074 263 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 RRM2P31350 389 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 MLLT10P55197 1068 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CDH12P55289 794 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 C21orf59P57076 290 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 C2orf80Q0P641 193 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 GRIK2Q13002 908 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TP53BP2Q13625 1128 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 TRIM46Q7Z4K8 759 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 OR7G3Q8NG95 312 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CLP1Q92989 425 aaKnown RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 USP7Q93009 1102 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 NRBF2Q96F24 287 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CSF3RQ99062 836 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 CPPED1Q9BRF8 314 aaPredicted RBP12.89□□□□□ -0.35
MCF2L-213ENST00000421756 OSBPL10Q9BXB5 764 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 EMILIN2Q9BXX0 1053 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 OSBPL6Q9BZF3 934 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 ABCG4Q9H172 646 aa12.89□□□□□ -0.35
MCF2L-213ENST00000421756 NOTCH4Q99466 2003 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 PNMA8CA0A1B0GUJ8 204 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 OTOL1A6NHN0 477 aaPredicted RBP12.88□□□□□ -0.35
MCF2L-213ENST00000421756 CAPNS1P04632 268 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 CEBPBP17676 345 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 NUP107P57740 925 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 TAS2R50P59544 299 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 PARS2Q7L3T8 475 aaKnown RBP12.88□□□□□ -0.35
MCF2L-213ENST00000421756 TTC29Q8NA56 475 aaPredicted RBP12.88□□□□□ -0.35
MCF2L-213ENST00000421756 STON2Q8WXE9 905 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 PROX1Q92786 737 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 RBM4BQ9BQ04 359 aaKnown RBP12.88□□□□□ -0.35
MCF2L-213ENST00000421756 RBM4Q9BWF3 364 aaKnown RBP12.88□□□□□ -0.35
MCF2L-213ENST00000421756 EPB41L1Q9H4G0 881 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 SIRT5Q9NXA8 310 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 ASCC3Q8N3C0 2202 aaKnown RBP12.88□□□□□ -0.35
MCF2L-213ENST00000421756 SCELO95171 688 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 CXCL10P02778 98 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 LCKP06239 509 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 KDELR2P33947 212 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 DGKGP49619 791 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 HLCSP50747 726 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 TBPL1P62380 186 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 SOWAHCQ53LP3 525 aaPredicted RBP12.88□□□□□ -0.35
MCF2L-213ENST00000421756 OR2T5Q6IEZ7 315 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 ZNF783Q6ZMS7 281 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 SLC15A4Q8N697 577 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 OR2T29Q8NH02 315 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 YIPF4Q9BSR8 244 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 KCNH6Q9H252 994 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 XKR8Q9H6D3 395 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 REEP1Q9H902 201 aa12.88□□□□□ -0.35
MCF2L-213ENST00000421756 KLHL20Q9Y2M5 609 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms