RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TPMTP51580 245 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 PTSQ03393 145 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 NFE2L1Q14494 772 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 PCLAFQ15004 111 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 RFTN2Q52LD8 501 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CD200R1Q8TD46 325 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 NCSTNQ92542 709 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 MTERF1Q99551 399 aaKnown RBP8.26□□□□□ -1.09
SYNE1-211ENST00000413186 ADPRHL2Q9NX46 363 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 GPRC5BQ9NZH0 403 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 TRPS1Q9UHF7 1281 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 MICAL3Q7RTP6 2002 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 LCTP09848 1927 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 BCAT2O15382 392 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-211ENST00000413186 GJB3O75712 270 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 SNX4O95219 450 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 ANPEPP15144 967 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 ALAS2P22557 587 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CSTF2P33240 577 aaKnown RBP eCLIP8.26□□□□□ -1.09
SYNE1-211ENST00000413186 SLC25A3Q00325 362 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 RUNX1T1Q06455 604 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 SPRED2Q7Z698 418 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 AMIGO1Q86WK6 493 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 FAM129CQ86XR2 697 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CPSF7Q8N684 471 aaKnown RBP8.26□□□□□ -1.09
SYNE1-211ENST00000413186 PCYT1BQ9Y5K3 369 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-211ENST00000413186 ENTPD2Q9Y5L3 495 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 OR51B4Q9Y5P0 310 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 A0A1B0GTW7 788 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 LOC730098B7Z3J9 87 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 YKT6O15498 198 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 DLGAP3O95886 979 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CHRNGP07510 517 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 MMP2P08253 660 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CISD3P0C7P0 127 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CLUP10909 449 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 EPORP19235 508 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CD27P26842 260 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CDKN1CP49918 316 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-211ENST00000413186 FOXM1Q08050 763 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 TIGD2Q4W5G0 525 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 PDZD3Q86UT5 571 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 C12orf40Q86WS4 652 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 OR4F6Q8NGB9 312 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 DNAJB8Q8NHS0 232 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 CYGBQ8WWM9 190 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 FBXL8Q96CD0 374 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 MARK4Q96L34 752 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 DHRS4Q9BTZ2 278 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 KRCC1Q9NPI7 259 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-211ENST00000413186 EHD3Q9NZN3 535 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 TMCC3Q9ULS5 477 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 ZNF232Q9UNY5 417 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 PCDHGB3Q9Y5G1 929 aa8.26□□□□□ -1.09
SYNE1-211ENST00000413186 MOSPD3O75425 235 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 C1GALT1C1LP0DN25 315 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 CCR5P51681 352 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 POLR2JP52435 117 aaKnown RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 CLDN2P57739 230 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 ARHGAP19Q14CB8 494 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 SMAD2Q15796 467 aaKnown RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 TRIM16LQ309B1 348 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 FAM214AQ32MH5 1076 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 Q7L0L9 218 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 SYT13Q7L8C5 426 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 IL17RCQ8NAC3 791 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 ACVR1CQ8NER5 493 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 OR6C4Q8NGE1 309 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 ROPN1LQ96C74 230 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 PDLIM5Q96HC4 596 aaKnown RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 DUSP23Q9BVJ7 150 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 RDH14Q9HBH5 336 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 FKBP14Q9NWM8 211 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 TRNAU1APQ9NX07 287 aaKnown RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 CDH22Q9UJ99 828 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 SERTAD3Q9UJW9 196 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 FAM221BA6H8Z2 402 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 TNFRSF10CO14798 259 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 DFNA5O60443 496 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 LRATO95237 230 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 CER1O95813 267 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 PRSS56P0CW18 603 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 POLR2CP19387 275 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 TTKP33981 857 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 SOX11P35716 441 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 VASPP50552 380 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 RACK1P63244 317 aaKnown RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 UBAP2LQ14157 1087 aaKnown RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 WSCD2Q2TBF2 565 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 TMEM196Q5HYL7 178 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 TCHHL1Q5QJ38 904 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-211ENST00000413186 NLRP8Q86W28 1048 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 PROSER1Q86XN7 944 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 ZDHHC1Q8WTX9 485 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 EDAQ92838 391 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 PCED1AQ9H1Q7 454 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 KCNH6Q9H252 994 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 ACSS2Q9NR19 701 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 MCM8Q9UJA3 840 aa8.25□□□□□ -1.09
SYNE1-211ENST00000413186 CNTRLQ7Z7A1 2325 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms