RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CIDEBQ9UHD4 219 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 ZFC3H1O60293 1989 aaKnown RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 E2F3O00716 465 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 FBP2O00757 339 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 MRASO14807 208 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CASQ2O14958 399 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CFLARO15519 480 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CBFA2T3O75081 653 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 BCAS2O75934 225 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PRR35P0CG20 571 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 IDO1P14902 403 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CKMT2P17540 419 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CYP2A7P20853 494 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 DUSP3P51452 185 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 FOXA1P55317 472 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 DAB2P98082 770 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CEACAM7Q14002 265 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 FLOT2Q14254 428 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 GRB7Q14451 532 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 COQ5Q5HYK3 327 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 IRGCQ6NXR0 463 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 GPRIN3Q6ZVF9 776 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 FRA10AC1Q70Z53 315 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 ZNF761Q86XN6 746 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 TMEM126BQ8IUX1 230 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 EFCAB3Q8N7B9 438 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PDPRQ8NCN5 879 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 OR52E1Q8NGJ3 308 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 JPH3Q8WXH2 748 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PKP4Q99569 1192 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 SLC38A3Q99624 504 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 NRTNQ99748 197 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 TUBB1Q9H4B7 451 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 UCK1Q9HA47 277 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 FTSJ1Q9UET6 329 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PLAGL1Q9UM63 463 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 NDUFAF1Q9Y375 327 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PCDHGA7Q9Y5G6 932 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 ATP6AP2A0A1C7CYW4 349 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 EME2A4GXA9 379 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-204ENST00000409441 KRT87PA6NCN2 255 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 PPP6CO00743 305 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 ATP6AP2O75787 350 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 ENO2P09104 434 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-204ENST00000409441 PTPRZ1P23471 2315 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-204ENST00000409441 ALDH4A1P30038 563 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 TRAP1Q12931 704 aaKnown RBP12.94□□□□□ -0.34
LIMS1-204ENST00000409441 BLMHQ13867 455 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 RBBP7Q16576 425 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 XKR7Q5GH72 579 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 LCE2DQ5TA82 110 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-204ENST00000409441 METTL2BQ6P1Q9 378 aaKnown RBP12.94□□□□□ -0.34
LIMS1-204ENST00000409441 C8orf82Q6P1X6 216 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-204ENST00000409441 PRMT9Q6P2P2 845 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 GUSBP11Q6P575 273 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 ZNF438Q7Z4V0 828 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 PIP4P1Q86T03 277 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 SYVN1Q86TM6 617 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 OR4E2Q8NGC2 313 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 OR9A1PQ8NGU1 263 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 LCN9Q8WX39 176 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 TUBGCP3Q96CW5 907 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 ASB9Q96DX5 294 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 CCDC138Q96M89 665 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 CDC6Q99741 560 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 ECSITQ9BQ95 431 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 XKR8Q9H6D3 395 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 RDH14Q9HBH5 336 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 SDR39U1Q9NRG7 319 aaPredicted RBP12.94□□□□□ -0.34
LIMS1-204ENST00000409441 EVA1BQ9NVM1 165 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 RIC8BQ9NVN3 520 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 ARL15Q9NXU5 204 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 CROTQ9UKG9 612 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 OARD1Q9Y530 152 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 FAM186AA6NE01 2351 aa12.94□□□□□ -0.34
LIMS1-204ENST00000409441 ASCC3Q8N3C0 2202 aaKnown RBP12.93□□□□□ -0.34
LIMS1-204ENST00000409441 PABPN1LA6NDY0 278 aaKnown RBP12.93□□□□□ -0.34
LIMS1-204ENST00000409441 NCF1BA6NI72 391 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-204ENST00000409441 NCF1CA8MVU1 366 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-204ENST00000409441 H3BNX3 289 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 B4GAT1O43505 415 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 PEX1O43933 1283 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 KDM1AO60341 852 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 GUCA1CO95843 209 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 NCF1P14598 390 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-204ENST00000409441 PNLIPP16233 465 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 GPR3P46089 330 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 AGTR2P50052 363 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 AP1S2P56377 157 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 MRPS35P82673 323 aaKnown RBP12.93□□□□□ -0.34
LIMS1-204ENST00000409441 KLC1Q07866 573 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 PLCL1Q15111 1095 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 FUNDC1Q8IVP5 155 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 Q8N9G6 341 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-204ENST00000409441 BAHD1Q8TBE0 780 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-204ENST00000409441 NETO1Q8TDF5 533 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 NAT6Q93015 286 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 CCDC74AQ96AQ1 378 aa12.93□□□□□ -0.34
LIMS1-204ENST00000409441 KCNA7Q96RP8 456 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms