RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ATL1Q8WXF7 558 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 CHCHD6Q9BRQ6 235 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 CENPOQ9BU64 300 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 CWH43Q9H720 699 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 TAS2R16Q9NYV7 291 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 UGT2A1Q9Y4X1 527 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 FRMPD3Q5JV73 1810 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 ZNF840PA6NDX5 716 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 ADAM12O43184 909 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 ARHGEF15O94989 841 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 EOMESO95936 686 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 PTHP01270 115 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 RPLP2P05387 115 aaKnown RBP15.85■□□□□ 0.13
SDC4-201ENST00000372733 RPLP0P05388 317 aaKnown RBP15.85■□□□□ 0.13
SDC4-201ENST00000372733 CDK1P06493 297 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 ADORA3P0DMS8 318 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 HNF1BP35680 557 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 GGT2P36268 569 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 KCNJ10P78508 379 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 MBTPS1Q14703 1052 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 KCNA10Q16322 511 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 PTCHD3Q3KNS1 767 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 HECTD3Q5T447 861 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 CCBE1Q6UXH8 406 aaPredicted RBP15.85■□□□□ 0.13
SDC4-201ENST00000372733 NLGN4XQ8N0W4 816 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 WFDC5Q8TCV5 224 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 HTATIP2Q9BUP3 242 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 TTLL2Q9BWV7 592 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 RETREG1Q9H6L5 497 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 MARCH5Q9NX47 278 aa15.85■□□□□ 0.13
SDC4-201ENST00000372733 TBL1XO60907 577 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 S100A5P33763 92 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 BOP1Q14137 746 aaKnown RBP15.84■□□□□ 0.13
SDC4-201ENST00000372733 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.84■□□□□ 0.13
SDC4-201ENST00000372733 MSANTD1Q6ZTZ1 278 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 ANKS3Q6ZW76 656 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 LRRC70Q7Z2Q7 622 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 PSD4Q8NDX1 1056 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 KBTBD8Q8NFY9 601 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 SH3KBP1Q96B97 665 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 PLD4Q96BZ4 506 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 FEVQ99581 238 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 EPYCQ99645 322 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 NXF2Q9GZY0 626 aaKnown RBP15.84■□□□□ 0.13
SDC4-201ENST00000372733 RLIMQ9NVW2 624 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 KCTD5Q9NXV2 234 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 IFT52Q9Y366 437 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 A6NL46 340 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 FAM47E-STBD1D6RA91 191 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 HAT1O14929 419 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 SMAD6O43541 496 aaKnown RBP15.84■□□□□ 0.13
SDC4-201ENST00000372733 DYRK3O43781 588 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 TRBC1P01850 177 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 HSMCR30P0CW71 290 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 LAMP1P11279 417 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 PRPS1L1P21108 318 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 PRPH2P23942 346 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 CTGFP29279 349 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 CCR7P32248 378 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 CSKP41240 450 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 GGTA1PQ4G0N0 100 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 FRG2Q64ET8 278 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 GDPD3Q7L5L3 318 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 TSEN54Q7Z6J9 526 aaKnown RBP15.84■□□□□ 0.13
SDC4-201ENST00000372733 SYNPOQ8N3V7 929 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 SOCS4Q8WXH5 440 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 MYDGFQ969H8 173 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 ZNF486Q96H40 463 aaPredicted RBP15.84■□□□□ 0.13
SDC4-201ENST00000372733 FRG2BQ96QU4 278 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 CDK5RAP1Q96SZ6 601 aaKnown RBP15.84■□□□□ 0.13
SDC4-201ENST00000372733 TPK1Q9H3S4 243 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 TPT1P8Q9HAU6 139 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 BTBD3Q9Y2F9 522 aa15.84■□□□□ 0.13
SDC4-201ENST00000372733 SCN8AQ9UQD0 1980 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 CLCA1A8K7I4 914 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 OPN1SWP03999 348 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 EIF2S1P05198 315 aaKnown RBP15.83■□□□□ 0.13
SDC4-201ENST00000372733 S100A1P23297 94 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 PRKCDQ05655 676 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 DDX39BQ13838 428 aaKnown RBP15.83■□□□□ 0.13
SDC4-201ENST00000372733 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.83■□□□□ 0.13
SDC4-201ENST00000372733 TAS1R1Q7RTX1 841 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 TMEM173Q86WV6 379 aaPredicted RBP15.83■□□□□ 0.13
SDC4-201ENST00000372733 ZSWIM9Q86XI8 627 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 SLC5A8Q8N695 610 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 CSGALNACT1Q8TDX6 532 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 ROGDIQ9GZN7 287 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 RNF38Q9H0F5 515 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 TP63Q9H3D4 680 aaPredicted RBP15.83■□□□□ 0.13
SDC4-201ENST00000372733 CCDC59Q9P031 241 aaKnown RBP15.83■□□□□ 0.13
SDC4-201ENST00000372733 MBD1Q9UIS9 605 aaPredicted RBP15.83■□□□□ 0.13
SDC4-201ENST00000372733 SLC22A14Q9Y267 594 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 PCDHGA3Q9Y5H0 932 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 MICAL3Q7RTP6 2002 aa15.83■□□□□ 0.13
SDC4-201ENST00000372733 TMEM229AB2RXF0 380 aa15.83■□□□□ 0.12
SDC4-201ENST00000372733 GFRA2O00451 464 aa15.83■□□□□ 0.12
SDC4-201ENST00000372733 KMOO15229 486 aa15.83■□□□□ 0.12
SDC4-201ENST00000372733 ADAMTS4O75173 837 aa15.83■□□□□ 0.12
SDC4-201ENST00000372733 AOAHP28039 575 aa15.83■□□□□ 0.12
SDC4-201ENST00000372733 SPAM1P38567 509 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms