RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 VWA2Q5GFL6 755 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 KIRREL2Q6UWL6 708 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 SBSNQ6UWP8 590 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 VN1R4Q7Z5H5 301 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 LAPTM4BQ86VI4 370 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 CEP97Q8IW35 865 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 PRSS58Q8IYP2 241 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 GALNT16Q8N428 558 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 SMAD5Q99717 465 aaKnown RBP17.49■□□□□ 0.39
CLN3-202ENST00000355477 MACROD1Q9BQ69 325 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 FBXL4Q9UKA2 621 aa17.49■□□□□ 0.39
CLN3-202ENST00000355477 NXT1Q9UKK6 140 aaKnown RBP17.49■□□□□ 0.39
CLN3-202ENST00000355477 MRPS2Q9Y399 296 aaKnown RBP17.49■□□□□ 0.39
CLN3-202ENST00000355477 IGLV3-12A0A075B6K2 115 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 KCNE1BA0A087WTH5 132 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 FEZF1A0PJY2 475 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 EIF3HO15372 352 aaKnown RBP eCLIP17.48■□□□□ 0.39
CLN3-202ENST00000355477 LCMT2O60294 686 aaKnown RBP17.48■□□□□ 0.39
CLN3-202ENST00000355477 GUCA1CO95843 209 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 ZGLP1P0C6A0 271 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 FBLP22087 321 aaKnown RBP17.48■□□□□ 0.39
CLN3-202ENST00000355477 HRH2P25021 359 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 PLTPP55058 493 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 FOXK1P85037 733 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 GARNL3Q5VVW2 1013 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 LCTLQ6UWM7 567 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 ZNF572Q7Z3I7 529 aaPredicted RBP17.48■□□□□ 0.39
CLN3-202ENST00000355477 C17orf64Q86WR6 236 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 AMER3Q8N944 861 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 CLEC1AQ8NC01 280 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 OR56A3Q8NH54 315 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 ANKRD49Q8WVL7 239 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 NACC2Q96BF6 587 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 MIEF2Q96C03 454 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 MVB12AQ96EY5 273 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 OR4K3Q96R72 315 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 TRIM54Q9BYV2 358 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 RHOJQ9H4E5 214 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 ZNF282Q9UDV7 671 aaPredicted RBP17.48■□□□□ 0.39
CLN3-202ENST00000355477 CDC14AQ9UNH5 594 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 PCDHGB7Q9Y5F8 929 aa17.48■□□□□ 0.39
CLN3-202ENST00000355477 PTPN13Q12923 2485 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 A0A0A6YYC8 382 aaPredicted RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 I3L1I5 382 aaPredicted RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 CDC7O00311 574 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 TXNDC9O14530 226 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 IGHEP01854 428 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 CDH1P12830 882 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 CCND1P24385 295 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 SLC26A3P40879 764 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 AP1S2P56377 157 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 SOX8P57073 446 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 GPX6P59796 221 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 RPS15AP62244 130 aaKnown RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 OCA2Q04671 838 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 DSG2Q14126 1118 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 MYBPC3Q14896 1274 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 PPP1R3AQ16821 1122 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 CAPN13Q6MZZ7 669 aaPredicted RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 RBMXL3Q8N7X1 1067 aaKnown RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 FBXO25Q8TCJ0 367 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 FBXL8Q96CD0 374 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 MMABQ96EY8 250 aaPredicted RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 VPS39Q96JC1 886 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 CRB3Q9BUF7 120 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 YIPF2Q9BWQ6 316 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 MFRPQ9BY79 579 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 ZNF552Q9H707 407 aaPredicted RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 ATP13A2Q9NQ11 1180 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 SEMA3GQ9NS98 782 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 TRPC4Q9UBN4 977 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 G3BP2Q9UN86 482 aaKnown RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 PLAAQ9Y263 795 aa17.47■□□□□ 0.39
CLN3-202ENST00000355477 MTO1Q9Y2Z2 717 aaKnown RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 UTP11Q9Y3A2 253 aaKnown RBP17.47■□□□□ 0.39
CLN3-202ENST00000355477 USP9XQ93008 2570 aaPredicted RBP17.46■□□□□ 0.39
CLN3-202ENST00000355477 TCRBV9S1A1TA0A576 114 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 NPEPPSL1A6NEC2 478 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 C1QAP02745 245 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 BCL6P41182 706 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 FAM53BQ14153 422 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 RBBP7Q16576 425 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 SYT16Q17RD7 645 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 ZDHHC24Q6UX98 284 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 C3orf62Q6ZUJ4 267 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 SHISA5Q8N114 240 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 NKAPQ8N5F7 415 aaKnown RBP17.46■□□□□ 0.39
CLN3-202ENST00000355477 OR11G2Q8NGC1 345 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 TM4SF19Q96DZ7 209 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 C16orf45Q96MC5 204 aaPredicted RBP17.46■□□□□ 0.39
CLN3-202ENST00000355477 HAUS8Q9BT25 410 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 DRC3Q9H069 523 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 CAB39LQ9H9S4 337 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 ZBTB20Q9HC78 741 aaPredicted RBP17.46■□□□□ 0.39
CLN3-202ENST00000355477 NSMCE4AQ9NXX6 385 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 C3orf18Q9UK00 162 aa17.46■□□□□ 0.39
CLN3-202ENST00000355477 NOVA2Q9UNW9 492 aaKnown RBP17.46■□□□□ 0.39
CLN3-202ENST00000355477 FAM159BA6NKW6 160 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 DPM1O60762 260 aa17.45■□□□□ 0.38
CLN3-202ENST00000355477 ENO2P09104 434 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms