RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 MKKSQ9NPJ1 570 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 NEDD8-MDP1E9PL57 170 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 HNRNPFP52597 415 aaKnown RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 KEAP1Q14145 624 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 IFNLR1Q8IU57 520 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 DEC1Q9P2X7 70 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 ERVK-11Q9UQG0 969 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 IFT52Q9Y366 437 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 KDELR3O43731 214 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 KANK2Q63ZY3 851 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 RNF31Q96EP0 1072 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 VMP1Q96GC9 406 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 RBM18Q96H35 190 aaKnown RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 FAIMQ9NVQ4 179 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 LRRTM2O43300 516 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 PFKLP17858 780 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 CSNK2A2P19784 350 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 C6orf141Q5SZD1 244 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 GOLGA7Q7Z5G4 137 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 CFAP52Q8N1V2 620 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 SCML4Q8N228 414 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 GDPD1Q8N9F7 314 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 ASCC1Q8N9N2 400 aaKnown RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 CD180Q99467 661 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 SPIN1Q9Y657 262 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 AHDC1Q5TGY3 1603 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC38A8A6NNN8 435 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 CAPN14A8MX76 684 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 C9IYK1 514 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 FANCGO15287 622 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 FGF4P08620 206 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 GJA9P57773 515 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 CD47Q08722 323 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC22A10Q63ZE4 541 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 CHFRQ96EP1 664 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF354BQ96LW1 612 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 DPEP3Q9H4B8 488 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 PAK1IP1Q9NWT1 392 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 GPSM3Q9Y4H4 160 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 URB1O60287 2271 aaKnown RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 RLN2P04090 185 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 APODP05090 189 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 AMD1P17707 334 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 DNASE1L1P49184 302 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 DCDC1P59894 354 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 NFE2L1Q14494 772 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 DSC3Q14574 896 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 TGFBIQ15582 683 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 HACD4Q5VWC8 232 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 NXPE1Q8N323 547 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 BBS10Q8TAM1 723 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 ZSWIM3Q96MP5 696 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 STRA6Q9BX79 667 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 TBC1D17Q9HA65 648 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 PHF24Q9UPV7 400 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 LRRN3E7EW58 273 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 SEPT4O43236 478 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 ANXA3P12429 323 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 LCN1P31025 176 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 PRMT2P55345 433 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 CDK6Q00534 326 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 SYVN1Q86TM6 617 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 CRYGNQ8WXF5 182 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 LRRN3Q9H3W5 708 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 LYARQ9NX58 379 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 NHSQ6T4R5 1651 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 DCLK1O15075 740 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 SH3BGRLO75368 114 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 RP2O75695 350 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 DNTTP04053 509 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 ATP1B2P14415 290 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 EVX2Q03828 476 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 IDNKQ5T6J7 187 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 STX12Q86Y82 276 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 TRNT1Q96Q11 434 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 TPT1P8Q9HAU6 139 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 MAT2BQ9NZL9 334 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 KLHL42Q9P2K6 505 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 ISM1B1AKI9 464 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 ATXN8OSP0DMR3 200 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 LMO2P25791 158 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 IVDP26440 423 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 RCAN2Q14206 197 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 DEFB128Q7Z7B8 93 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 EXOSC8Q96B26 276 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 PTTG3PQ9NZH4 202 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 ABCG2Q9UNQ0 655 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 TOP3BO95985 862 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF155Q12901 538 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 CLCA4Q14CN2 919 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 TARBP2Q15633 366 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 CEP76Q8TAP6 659 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 XYLT2Q9H1B5 865 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 MRPS30Q9NP92 439 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF639Q9UID6 485 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC27A5Q9Y2P5 690 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 HS3ST4Q9Y661 456 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 TREHO43280 583 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 AGTR1P30556 359 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 BLKP51451 505 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms