RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	CEP250	Q9BV73	2442 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	FOXD2	O60548	495 aa	Predicted RBP	11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	ALOX12	P18054	663 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	CCNA2	P20248	432 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	CAPG	P40121	348 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	C21orf59	P57076	290 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	CDC42	P60953	191 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	ELAVL3	Q14576	367 aa	Known RBP	11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	KLHDC10	Q6PID8	442 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	CCDC80	Q76M96	950 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	CNTN4	Q8IWV2	1026 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	SLC34A3	Q8N130	599 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	OR9A1P	Q8NGU1	263 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	KCNC2	Q96PR1	638 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	EFCAB11	Q9BUY7	163 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	RBCK1	Q9BYM8	510 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771	OARD1	Q9Y530	152 aa		11.46	□□□□□ -0.58
DDR1-223	ENST00000324771		A0A1W2PQU0	124 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	PRL	P01236	227 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	DAG1	Q14118	895 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	MEP1A	Q16819	746 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ZNF438	Q7Z4V0	828 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	EPHX4	Q8IUS5	362 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	CCDC103	Q8IW40	242 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	GHDC	Q8N2G8	530 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	RHBDF1	Q96CC6	855 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	RBM4B	Q9BQ04	359 aa	Known RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	INPP5K	Q9BT40	448 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	RBM4	Q9BWF3	364 aa	Known RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	TTLL2	Q9BWV7	592 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ITM2C	Q9NQX7	267 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ATXN10	Q9UBB4	475 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	WNK3	Q9BYP7	1800 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	OR52A4P	A6NMU1	304 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	HTRA2	O43464	458 aa	Predicted RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	IGLV3-25	P01717	112 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	IFNW1	P05000	195 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	OCM2	P0CE71	109 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	OCM	P0CE72	109 aa	Predicted RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	PAICS	P22234	425 aa	Known RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	RPL3	P39023	403 aa	Known RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	PXN	P49023	591 aa	Predicted RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	GK3P	Q14409	553 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	CNPY1	Q3B7I2	92 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	AMZ1	Q400G9	498 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	LARP4	Q71RC2	724 aa	Known RBP eCLIP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	VTCN1	Q7Z7D3	282 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	NFKBID	Q8NI38	313 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	SLC5A11	Q8WWX8	675 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ZNF419	Q96HQ0	510 aa	Predicted RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ZNF514	Q96K75	400 aa	Predicted RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	NKX2-4	Q9H2Z4	354 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	RAD21L1	Q9H4I0	556 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	VAPA	Q9P0L0	249 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ASB1	Q9Y576	335 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	MYL12B	O14950	172 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	NADK	O95544	446 aa	Predicted RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	BCHE	P06276	602 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	LAMP1	P11279	417 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	OXTR	P30559	389 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	GJA8	P48165	433 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	NCBP2	P52298	156 aa	Known RBP eCLIP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	TAS2R41	P59536	307 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	C1D	Q13901	141 aa	Known RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	NCF4	Q15080	339 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ENPP6	Q6UWR7	440 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	SH2D5	Q6ZV89	423 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	CDK20	Q8IZL9	346 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	HUS1B	Q8NHY5	278 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	L3HYPDH	Q96EM0	354 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ZNF607	Q96SK3	696 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	SORBS1	Q9BX66	1292 aa	Known RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	KLHL1	Q9NR64	748 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	DNAJB9	Q9UBS3	223 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ATP6V1H	Q9UI12	483 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	LRRC37A	A6NMS7	1700 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	TET1	Q8NFU7	2136 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	PRSS51	A0A1B0GVH4	220 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771		B4DGG1	531 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	TRMU	O75648	421 aa	Known RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	CCNYL3	P0C7X3	344 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	DNAJB1	P25685	340 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.45	□□□□□ -0.58	1e-5	■□□□□ 8.9
DDR1-223	ENST00000324771	LASP1	Q14847	261 aa	Known RBP	11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	CARTPT	Q16568	116 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	RNF130	Q86XS8	419 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	CLIP4	Q8N3C7	705 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	LEMD2	Q8NC56	503 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	MUS81	Q96NY9	551 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	ABCB10	Q9NRK6	738 aa		11.45	□□□□□ -0.58
DDR1-223	ENST00000324771	COL11A1	P12107	1806 aa	Predicted RBP	11.44	□□□□□ -0.58
DDR1-223	ENST00000324771		A0A1B0GTL3	188 aa		11.44	□□□□□ -0.58
DDR1-223	ENST00000324771	KPNA4	O00629	521 aa	Predicted RBP	11.44	□□□□□ -0.58
DDR1-223	ENST00000324771	AP3D1	O14617	1153 aa		11.44	□□□□□ -0.58
DDR1-223	ENST00000324771	TACR1	P25103	407 aa		11.44	□□□□□ -0.58
DDR1-223	ENST00000324771	DDX6	P26196	483 aa	Known RBP eCLIP	11.44	□□□□□ -0.58	4e-7	■■□□□ 13.4
DDR1-223	ENST00000324771	PSMD7	P51665	324 aa		11.44	□□□□□ -0.58
DDR1-223	ENST00000324771	CBX3	Q13185	183 aa		11.44	□□□□□ -0.58
DDR1-223	ENST00000324771	RUNX3	Q13761	415 aa		11.44	□□□□□ -0.58

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