RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 METTL4Q8N3J2 472 aa11.6□□□□□ -0.55
USHBP1-201ENST00000252597 PARP16Q8N5Y8 322 aa11.6□□□□□ -0.55
USHBP1-201ENST00000252597 DACT3Q96B18 629 aaPredicted RBP11.6□□□□□ -0.55
USHBP1-201ENST00000252597 TRIB3Q96RU7 358 aa11.6□□□□□ -0.55
USHBP1-201ENST00000252597 PKP4Q99569 1192 aa11.6□□□□□ -0.55
USHBP1-201ENST00000252597 THG1LQ9NWX6 298 aaKnown RBP11.6□□□□□ -0.55
USHBP1-201ENST00000252597 MS4A12Q9NXJ0 267 aa11.6□□□□□ -0.55
USHBP1-201ENST00000252597 DYTNA2CJ06 578 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 TPD52L2O43399 206 aaKnown RBP11.59□□□□□ -0.55
USHBP1-201ENST00000252597 COCHO43405 550 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 UPK1BO75841 260 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 CKMP06732 381 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 FPR1P21462 350 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 CD6P30203 668 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 HNF4AP41235 474 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ALDH9A1P49189 494 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 STK19P49842 368 aaPredicted RBP11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ARF5P84085 180 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 NFATC2Q13469 925 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 PLEKHG6Q3KR16 790 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 CLLU1OSQ5K130 101 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 DEPDC1Q5TB30 811 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 OR10G2Q8NGC3 310 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 SCAMP4Q969E2 229 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 MMP28Q9H239 520 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ZDHHC6Q9H6R6 413 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 IL17CQ9P0M4 197 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ANKMY1Q9P2S6 941 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ERVK-11Q9UQG0 969 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 MYLKQ15746 1914 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 SLC38A8A6NNN8 435 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 GFRA2O00451 464 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 PRRG1O14668 218 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 AOC2O75106 756 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 KCNK2O95069 426 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 CCNDBP1O95273 360 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 IFI30P13284 250 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 HOXD8P13378 290 aaPredicted RBP11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ETFAP13804 333 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 CHI3L1P36222 383 aaPredicted RBP11.59□□□□□ -0.55
USHBP1-201ENST00000252597 SLC19A1P41440 591 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 RAB15P59190 212 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 RPS26P62854 115 aaKnown RBP11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ACVR1Q04771 509 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ABHD18Q0P651 414 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 CSTF3Q12996 717 aaKnown RBP11.59□□□□□ -0.55
USHBP1-201ENST00000252597 LEXMQ3ZCV2 418 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 NOXRED1Q6NXP6 359 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 ZNF683Q8IZ20 524 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 AUTS2Q8WXX7 1259 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 SLC38A4Q969I6 547 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 TRNT1Q96Q11 434 aaKnown RBP11.59□□□□□ -0.55
USHBP1-201ENST00000252597 OR5M11Q96RB7 305 aa11.59□□□□□ -0.55
USHBP1-201ENST00000252597 SLIRPQ9GZT3 109 aaKnown RBP11.59□□□□□ -0.55
USHBP1-201ENST00000252597 MANSC4A6NHS7 340 aaPredicted RBP11.58□□□□□ -0.55
USHBP1-201ENST00000252597 M0QX08 132 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 KIAA0513O60268 411 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 CLDN11O75508 207 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 NPPAP01160 153 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 HNF1BP35680 557 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 SOX6P35712 828 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 SOX3P41225 446 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 CDH4P55283 916 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 CRHR2Q13324 411 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 BCL7AQ4VC05 210 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 AGAP7PQ5VUJ5 663 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 THOC7Q6I9Y2 204 aaKnown RBP11.58□□□□□ -0.55
USHBP1-201ENST00000252597 SHQ1Q6PI26 577 aaKnown RBP11.58□□□□□ -0.55
USHBP1-201ENST00000252597 PTCHD4Q6ZW05 846 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 IFNL1Q8IU54 200 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 ENTHD1Q8IYW4 607 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 APCDD1Q8J025 514 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 LGI4Q8N135 537 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 NAGSQ8N159 534 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 C1orf52Q8N6N3 182 aaKnown RBP11.58□□□□□ -0.55
USHBP1-201ENST00000252597 NEDD4LQ96PU5 975 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 PKMYT1Q99640 499 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 CPPED1Q9BRF8 314 aaPredicted RBP11.58□□□□□ -0.55
USHBP1-201ENST00000252597 CLMPQ9H6B4 373 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 QPCTLQ9NXS2 382 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 DNAJC27Q9NZQ0 273 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 TRPM5Q9NZQ8 1165 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 MBD1Q9UIS9 605 aaPredicted RBP11.58□□□□□ -0.55
USHBP1-201ENST00000252597 RPS6KA6Q9UK32 745 aa11.58□□□□□ -0.55
USHBP1-201ENST00000252597 WBP11Q9Y2W2 641 aaKnown RBP11.58□□□□□ -0.55
USHBP1-201ENST00000252597 TRIM64A6NGJ6 449 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 TBKBP1A7MCY6 615 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 WASH4PA8MWX3 477 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 KDELR3O43731 214 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 RPLP0P05388 317 aaKnown RBP11.58□□□□□ -0.56
USHBP1-201ENST00000252597 SERPIND1P05546 499 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 ANXA4P09525 319 aaPredicted RBP11.58□□□□□ -0.56
USHBP1-201ENST00000252597 PTGER1P34995 402 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 GABARAPL2P60520 117 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 ELP6Q0PNE2 266 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 ZFP69Q49AA0 526 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 CCDC71Q8IV32 467 aaPredicted RBP11.58□□□□□ -0.56
USHBP1-201ENST00000252597 VRK3Q8IV63 474 aa11.58□□□□□ -0.56
USHBP1-201ENST00000252597 ARL14EPQ8N8R7 260 aaPredicted RBP11.58□□□□□ -0.56
USHBP1-201ENST00000252597 OR4A15Q8NGL6 344 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms