RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CXorf40BQ96DE9 158 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SEC14L3Q9UDX4 400 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CNTNAP2Q9UHC6 1331 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TEX13CA0A0J9YWL9 993 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RGS11O94810 467 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 IFNA2P01563 188 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 STAG3L1P0CL83 205 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HOXB1P14653 301 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 IL1R1P14778 569 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 INHBCP55103 352 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RHOAP61586 193 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RRAS2P62070 204 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SPHARQ15513 63 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RPTNQ6XPR3 784 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF438Q7Z4V0 828 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 EFCAB3Q8N7B9 438 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SLC39A7Q92504 469 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SLC7A6Q92536 515 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 OSTF1Q92882 214 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 PCBD2Q9H0N5 130 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SLC6A17Q9H1V8 727 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 PORCNQ9H237 461 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MFSD1Q9H3U5 465 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 AGO4Q9HCK5 861 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TRBC1P01850 177 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 C8GP07360 202 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 NR2C1P13056 603 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FMO3P31513 532 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 P2RX3P56373 397 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TAP2Q03519 686 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TDRD10Q5VZ19 366 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 NLRP8Q86W28 1048 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CADM2Q8N3J6 435 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 UBA3Q8TBC4 463 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SPATA33Q96N06 139 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 DERL2Q9GZP9 239 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SLC25A51Q9H1U9 297 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 KCNH6Q9H252 994 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 EXTL2Q9UBQ6 330 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ERVK-19Q9WJR5 959 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TNFSF13BQ9Y275 285 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 PPP2R3BQ9Y5P8 575 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 A0A1W2PPL8 197 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 DUXAA6NLW8 204 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 P2RX6O15547 441 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TMEM63AO94886 807 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CSF1P09603 554 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SRCP12931 536 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 UNGP13051 313 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 YBX3P16989 372 aaKnown RBP eCLIP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MC2RQ01718 297 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HSPA14Q0VDF9 509 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 IL17AQ16552 155 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 PARP15Q460N3 678 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 KLHL26Q53HC5 615 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SPIN4Q56A73 249 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TRIM48Q8IWZ4 208 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FTMTQ8N4E7 242 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 EPYCQ99645 322 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MRIQ9BWK5 157 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 LIN28AQ9H9Z2 209 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 KCTD5Q9NXV2 234 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 EIF3FO00303 357 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 PHYHO14832 338 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MUSKO15146 869 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 UPP2O95045 317 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ST8SIA6P61647 398 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HNRNPA0Q13151 305 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SLC9A5Q14940 896 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FASTKD3Q14CZ7 662 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 LIX1LQ8IVB5 337 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GTPBP8Q8N3Z3 284 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CYP2W1Q8TAV3 490 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF599Q96NL3 588 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 PIF1Q9H611 641 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GORASP2Q9H8Y8 452 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 OR12D3Q9UGF7 316 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ANKRD63C9JTQ0 380 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 E5RJQ4 531 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 SSX4O60224 188 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FUCA1P04066 466 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CAPN3P20807 821 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 BRCC3P46736 316 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CLCN4P51793 760 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CACNB3P54284 484 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GPX6P59796 221 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RANP62826 216 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MTAPQ13126 283 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ESRP1Q6NXG1 681 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 KDELC1Q6UW63 502 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 OOSP2Q86WS3 158 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MARCH9Q86YJ5 346 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HS3ST5Q8IZT8 346 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF615Q8N8J6 731 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ELP4Q96EB1 424 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CSPG4P5Q96PW8 444 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RANBP9Q96S59 729 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 UHRF1Q96T88 793 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 OR51J1Q9H342 316 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 181.3 ms