RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.17□□□□□ -1.9
CD44-239ENST00000639002 hCG_1807616A0A1W2PRN6 198 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 FSD2A1L4K1 749 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 PHF1O43189 567 aaPredicted RBP3.17□□□□□ -1.9
CD44-239ENST00000639002 ECE2O60344 883 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 ERAL1O75616 437 aaKnown RBP3.17□□□□□ -1.9
CD44-239ENST00000639002 LINGO3P0C6S8 592 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 IRF2P14316 349 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 MYOGP15173 224 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 ALDH1B1P30837 517 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 NAP1L1P55209 391 aaKnown RBP3.17□□□□□ -1.9
CD44-239ENST00000639002 CLDN15P56746 228 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 FCHO2Q0JRZ9 810 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 HSPB3Q12988 150 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 SRSF9Q13242 221 aaKnown RBP eCLIP3.17□□□□□ -1.9
CD44-239ENST00000639002 ZNF177Q13360 481 aaPredicted RBP3.17□□□□□ -1.9
CD44-239ENST00000639002 TRIM29Q14134 588 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 NTRK2Q16620 822 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 OR4A47Q6IF82 309 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 C3P1Q6ZMU1 363 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 FAM89BQ8N5H3 189 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 SUMF1Q8NBK3 374 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 PRPF31Q8WWY3 499 aaKnown RBP3.17□□□□□ -1.9
CD44-239ENST00000639002 ZNF597Q96LX8 424 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 SEPHS2Q99611 448 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 CHCHD5Q9BSY4 110 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 EGLN3Q9H6Z9 239 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 PDE7BQ9NP56 450 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 BLOC1S4Q9NUP1 217 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 OLAHQ9NV23 265 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 HAO2Q9NYQ3 351 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.17□□□□□ -1.9
CD44-239ENST00000639002 RPS6KL1Q9Y6S9 549 aa3.17□□□□□ -1.9
CD44-239ENST00000639002 TRIM77I1YAP6 450 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 PORP16435 677 aaPredicted RBP3.16□□□□□ -1.9
CD44-239ENST00000639002 DHODHQ02127 395 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 TRAP1Q12931 704 aaKnown RBP3.16□□□□□ -1.9
CD44-239ENST00000639002 MS4A18Q3C1V0 323 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 CDHR3Q6ZTQ4 885 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 CHMP1BQ7LBR1 199 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 NDUFAF2Q8N183 169 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 TDRD5Q8NAT2 981 aaKnown RBP3.16□□□□□ -1.9
CD44-239ENST00000639002 PTERQ96BW5 349 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 EVI5LQ96CN4 794 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 SLC2A11Q9BYW1 496 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 DNAI2Q9GZS0 605 aa3.16□□□□□ -1.9
CD44-239ENST00000639002 PA2G4Q9UQ80 394 aaKnown RBP3.16□□□□□ -1.9
CD44-239ENST00000639002 A0A087WWV3 80 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 IGHV3-20A0A0C4DH32 117 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 IGHV3-38A0A0C4DH36 116 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 MTMR11A4FU01 709 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 RTL8CO15255 209 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 BAG3O95817 575 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 SAT1P21673 171 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 EDNRAP25101 427 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 LHX1P48742 406 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 POLR2LP62875 67 aaKnown RBP3.15□□□□□ -1.91
CD44-239ENST00000639002 CHAF1BQ13112 559 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 ZNF146Q15072 292 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 KRTAP5-2Q701N4 177 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 FCRLAQ7L513 359 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 KCNMB4Q86W47 210 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 TEX19Q8NA77 164 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 KLHL30-AS1Q8NEE0 82 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 APPL2Q8NEU8 664 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 OR10G7Q8NGN6 311 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 SSC4DQ8WTU2 575 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 SKA1Q96BD8 255 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 TIGD1Q96MW7 591 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 PI4K2AQ9BTU6 479 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 CCDC28BQ9BUN5 200 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 MRPL1Q9BYD6 325 aaKnown RBP3.15□□□□□ -1.91
CD44-239ENST00000639002 GPR88Q9GZN0 384 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 ADNPQ9H2P0 1102 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.15□□□□□ -1.91
CD44-239ENST00000639002 GTSE1Q9NYZ3 720 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 STK26Q9P289 416 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 LNPEPQ9UIQ6 1025 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 VPS28Q9UK41 221 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 ELF5Q9UKW6 265 aaPredicted RBP3.15□□□□□ -1.91
CD44-239ENST00000639002 SPATA31D1Q6ZQQ2 1576 aa3.15□□□□□ -1.91
CD44-239ENST00000639002 GLOD5A6NK44 160 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 A8MV72 311 aaPredicted RBP3.14□□□□□ -1.91
CD44-239ENST00000639002 PRDM1O75626 825 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 TSPAN9O75954 239 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 PGM3O95394 542 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 CSN3P07498 182 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 CYP11B2P19099 503 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 CD22P20273 847 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 MATR3P43243 847 aaKnown RBP eCLIP3.14□□□□□ -1.91
CD44-239ENST00000639002 ZNF75DP51815 510 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 SGCGQ13326 291 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 CUL3Q13618 768 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 WTAPQ15007 396 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 C3AR1Q16581 482 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 MEA1Q16626 185 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 C4orf50Q6ZRC1 276 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 FGFRL1Q8N441 504 aa3.14□□□□□ -1.91
CD44-239ENST00000639002 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.14□□□□□ -1.91
CD44-239ENST00000639002 ATL1Q8WXF7 558 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms