RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 OR10Q1Q8NGQ4 319 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 CFAP61Q8NHU2 1237 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 TFB1MQ8WVM0 346 aaKnown RBP13.7□□□□□ -0.22
CLN3-249ENST00000636685 VN1R1Q9GZP7 353 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 SYNPO2LQ9H987 977 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 IMPACTQ9P2X3 320 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 RUVBL1Q9Y265 456 aaKnown RBP13.7□□□□□ -0.22
CLN3-249ENST00000636685 ARID1AO14497 2285 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 SCN3AQ9NY46 2000 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 A0A0A6YYC8 382 aaPredicted RBP13.69□□□□□ -0.22
CLN3-249ENST00000636685 A6NNC1 897 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 H0YGG7 62 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 I3L1I5 382 aaPredicted RBP13.69□□□□□ -0.22
CLN3-249ENST00000636685 HS6ST1O60243 411 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 PRMT3O60678 531 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 PDE9AO76083 593 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 CRTAMO95727 393 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 FTH1P02794 183 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 ZFXP17010 805 aaPredicted RBP13.69□□□□□ -0.22
CLN3-249ENST00000636685 ARF3P61204 181 aaPredicted RBP13.69□□□□□ -0.22
CLN3-249ENST00000636685 HKDC1Q2TB90 917 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 DNAJC21Q5F1R6 531 aaKnown RBP13.69□□□□□ -0.22
CLN3-249ENST00000636685 FBXO42Q6P3S6 717 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 ZNF227Q86WZ6 799 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 VRK3Q8IV63 474 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 LIX1LQ8IVB5 337 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 CIARTQ8N365 385 aaPredicted RBP13.69□□□□□ -0.22
CLN3-249ENST00000636685 OR5M3Q8NGP4 307 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 MVB12AQ96EY5 273 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 DNAJC1Q96KC8 554 aaKnown RBP13.69□□□□□ -0.22
CLN3-249ENST00000636685 COX4I2Q96KJ9 171 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 CYTH2Q99418 400 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 GORASP1Q9BQQ3 440 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 CDCP1Q9H5V8 836 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 NEUROD4Q9HD90 331 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 RSPH14Q9UHP6 348 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 ALG6Q9Y672 507 aa13.69□□□□□ -0.22
CLN3-249ENST00000636685 OR2W5A6NFC9 320 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 FOXS1O43638 330 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 FKBP9O95302 570 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 PECAM1P16284 738 aaPredicted RBP13.68□□□□□ -0.22
CLN3-249ENST00000636685 EMP3P54852 163 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 NKX6-1P78426 367 aaPredicted RBP13.68□□□□□ -0.22
CLN3-249ENST00000636685 FIGNQ5HY92 759 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 MFSD4BQ5TF39 518 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 RANBP10Q6VN20 620 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 ANKRD37Q7Z713 158 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 DCUN1D3Q8IWE4 304 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 M1APQ8TC57 530 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 RNF25Q96BH1 459 aaPredicted RBP13.68□□□□□ -0.22
CLN3-249ENST00000636685 ZFYVE21Q9BQ24 234 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 SLC6A16Q9GZN6 736 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 NUP62CLQ9H1M0 184 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 MMP25Q9NPA2 562 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 CTTNBP2NLQ9P2B4 639 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 SLC39A10Q9ULF5 831 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 KLK4Q9Y5K2 254 aa13.68□□□□□ -0.22
CLN3-249ENST00000636685 A0A0U1RQJ8 604 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 KRT1P04264 644 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 ADRA1AP35348 466 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 ZFP36L2P47974 494 aaKnown RBP13.67□□□□□ -0.22
CLN3-249ENST00000636685 GEMP55040 296 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 PPP2R2BQ00005 443 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 PLOD1Q02809 727 aaPredicted RBP13.67□□□□□ -0.22
CLN3-249ENST00000636685 TYRO3Q06418 890 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 EXT1Q16394 746 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 MINDY4Q4G0A6 757 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 LRRC8BQ6P9F7 803 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 SLC22A15Q8IZD6 547 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 SLC5A8Q8N695 610 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 CSNK1A1LQ8N752 337 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 POGLUT1Q8NBL1 392 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 OR2L3Q8NG85 312 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 HSD3B7Q9H2F3 369 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 C19orf25Q9UFG5 118 aaPredicted RBP13.67□□□□□ -0.22
CLN3-249ENST00000636685 CBLCQ9ULV8 474 aa13.67□□□□□ -0.22
CLN3-249ENST00000636685 CHD3Q12873 2000 aaKnown RBP13.67□□□□□ -0.22
CLN3-249ENST00000636685 SONP18583 2426 aaKnown RBP13.66□□□□□ -0.22
CLN3-249ENST00000636685 A0A087X0T9 212 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 A0A0G2JNJ9 132 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 OR2A25A4D2G3 310 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 KRT87PA6NCN2 255 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 H7C1Q1 480 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 SMAD7O15105 426 aaKnown RBP13.66□□□□□ -0.22
CLN3-249ENST00000636685 FAM228BP0C875 321 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 TPP2P29144 1249 aaPredicted RBP13.66□□□□□ -0.22
CLN3-249ENST00000636685 SNRPNP63162 240 aaKnown RBP13.66□□□□□ -0.22
CLN3-249ENST00000636685 SHEQ5VZ18 495 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 ARHGAP11AQ6P4F7 1023 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 VSIG1Q86XK7 387 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 SULF2Q8IWU5 870 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 ARHGEF39Q8N4T4 335 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 OR52N2Q8NGI0 321 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 OR5M9Q8NGP3 310 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 PLSCR2Q9NRY7 297 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 PNPLA3Q9NST1 481 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 Q9UFV3 132 aa13.66□□□□□ -0.22
CLN3-249ENST00000636685 SOWAHDA6NJG2 315 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 RNF212BA8MTL3 300 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 NPIPA2E9PIF3 369 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms