RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SYT6Q5T7P8 510 aaPredicted RBP12.36□□□□□ -0.43
LINC00540-203ENST00000631321 LAIR1Q6GTX8 287 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 FAHD1Q6P587 224 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 IGFN1Q86VF2 1251 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 SYNPOQ8N3V7 929 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 AUTS2Q8WXX7 1259 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 FAM210AQ96ND0 272 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 PITX2Q99697 317 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 APOL4Q9BPW4 351 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 EBPLQ9BY08 206 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 ZDHHC6Q9H6R6 413 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 NECTIN3Q9NQS3 549 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 CHCHD3Q9NX63 227 aaKnown RBP12.36□□□□□ -0.43
LINC00540-203ENST00000631321 COQ6Q9Y2Z9 468 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 SCN5AQ14524 2016 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 PQBP1O60828 265 aaKnown RBP12.36□□□□□ -0.43
LINC00540-203ENST00000631321 GSTM1P09488 218 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 OCM2P0CE71 109 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 OCMP0CE72 109 aaPredicted RBP12.36□□□□□ -0.43
LINC00540-203ENST00000631321 COX7A2P14406 83 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 FMO3P31513 532 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 OPRL1P41146 370 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 DCDC1P59894 354 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 IRF8Q02556 426 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 SIM2Q14190 667 aaPredicted RBP12.36□□□□□ -0.43
LINC00540-203ENST00000631321 ZNF846Q147U1 533 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 SPOUT1Q5T280 376 aaKnown RBP12.36□□□□□ -0.43
LINC00540-203ENST00000631321 CAMKMTQ7Z624 323 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 DEFB128Q7Z7B8 93 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 TSPYL5Q86VY4 417 aaPredicted RBP12.36□□□□□ -0.43
LINC00540-203ENST00000631321 CMTM8Q8IZV2 173 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 RNF175Q8N4F7 328 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 RORBQ92753 470 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 ZNF689Q96CS4 500 aaPredicted RBP12.36□□□□□ -0.43
LINC00540-203ENST00000631321 HSH2DQ96JZ2 352 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 CCDC90BQ9GZT6 254 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 ATG10Q9H0Y0 220 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 CHST8Q9H2A9 424 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 AKIP1Q9NQ31 210 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 PCDHB11Q9Y5F2 797 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 GMPPBQ9Y5P6 360 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 TRAV19A0A0A6YYK7 116 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 WASH3PC4AMC7 463 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 H0YIV9 168 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 LEFTY2O00292 366 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 GRM6O15303 877 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 YY2O15391 372 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 TEX28O15482 410 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 AOC2O75106 756 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 PSIP1O75475 530 aaKnown RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 FUCA1P04066 466 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 ZNF30P17039 623 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 CD97P48960 835 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 MVKQ03426 396 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 LAPTM4AQ15012 233 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 MAD2L1BPQ15013 274 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 RGS21Q2M5E4 152 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 ZNF621Q6ZSS3 439 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 VTCN1Q7Z7D3 282 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 ZBTB46Q86UZ6 589 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 GPR65Q8IYL9 337 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 TTC29Q8NA56 475 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 ASZ1Q8WWH4 475 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 CCNB1IP1Q9NPC3 277 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 SCN3BQ9NY72 215 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 PDP1Q9P0J1 537 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 BTNL2Q9UIR0 455 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 OBSL1O75147 1896 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 KRT87PA6NCN2 255 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 MYO1GB0I1T2 1018 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 CLDN25C9JDP6 229 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 hCG_2039718K7EN88 272 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 SCAMP2O15127 329 aaKnown RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 LILRB3O75022 631 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 ABCB1P08183 1280 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 IDUAP35475 653 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 MASP1P48740 699 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 POLR2LP62875 67 aaKnown RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 OCA2Q04671 838 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 KIAA1614Q5VZ46 1190 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 GRHL2Q6ISB3 625 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 THOC6Q86W42 341 aaKnown RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 HORMAD1Q86X24 394 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 RBM12BQ8IXT5 1001 aaKnown RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 HS6ST3Q8IZP7 471 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 NAT16Q8N8M0 369 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 ELMO1Q92556 727 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 CLP1Q92989 425 aaKnown RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 C7orf34Q96L11 122 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 SIGLEC11Q96RL6 698 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 ASPSCR1Q9BZE9 553 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 BRF2Q9HAW0 419 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 RC3H2Q9HBD1 1191 aaKnown RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 SPG21Q9NZD8 308 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 NFKBIL1Q9UBC1 381 aaPredicted RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 SLC25A13Q9UJS0 675 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 MAPRE3Q9UPY8 281 aa12.35□□□□□ -0.43
LINC00540-203ENST00000631321 SAMHD1Q9Y3Z3 626 aaKnown RBP12.35□□□□□ -0.43
LINC00540-203ENST00000631321 DGKBQ9Y6T7 804 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms