RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 PRPS2P11908 318 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 JUPP14923 745 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 CCR8P51685 355 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 AQP4P55087 323 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 FUNDC1Q8IVP5 155 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 OR4K1Q8NGD4 311 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 NELL1Q92832 810 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 CIB1Q99828 191 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 CD93Q9NPY3 652 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 SLC13A4Q9UKG4 626 aa15.2■□□□□ 0.02
CPSF1-213ENST00000620219 SDC3O75056 442 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 MYCLP1P12525 358 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-213ENST00000620219 MRPS21P82921 87 aaKnown RBP15.19■□□□□ 0.02
CPSF1-213ENST00000620219 HERC3Q15034 1050 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 UGT3A2Q3SY77 523 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 TMEM259Q4ZIN3 620 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.19■□□□□ 0.02
CPSF1-213ENST00000620219 IYDQ6PHW0 289 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 HCAR2Q8TDS4 363 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 LRTOMTQ8WZ04 291 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 GIMAP4Q9NUV9 329 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 K7EQS6 105 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 THEGLP0DJG4 465 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 C1GALT1C1LP0DN25 315 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 GPX3P22352 226 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 CCR3P51677 355 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 PAGE3Q5JUK9 113 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 GLYATQ6IB77 296 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 OR7G3Q8NG95 312 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 OR4A15Q8NGL6 344 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 MAGEB10Q96LZ2 347 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-213ENST00000620219 VPS35Q96QK1 796 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 ACPTQ9BZG2 426 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 FGF22Q9HCT0 170 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 NDOR1Q9UHB4 597 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 INHBCP55103 352 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 SHDQ96IW2 340 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 TMEM168Q9H0V1 697 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 TRPV4Q9HBA0 871 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 GLOD5A6NK44 160 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 EIF3FO00303 357 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-213ENST00000620219 SLC22A2O15244 555 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 SLCO2B1O94956 709 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 TNFP01375 233 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 CMPK1P30085 196 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 C21orf59P57076 290 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 IRGCQ6NXR0 463 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 PAGE2Q7Z2X7 111 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 OR7A2PQ8NGA2 310 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 CANT1Q8WVQ1 401 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 PDXPQ96GD0 296 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 MAELQ96JY0 434 aaKnown RBP15.19■□□□□ 0.02
CPSF1-213ENST00000620219 F2RL3Q96RI0 385 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 ZIM2Q9NZV7 527 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 RAPGEFL1Q9UHV5 662 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 PCDHGA7Q9Y5G6 932 aa15.19■□□□□ 0.02
CPSF1-213ENST00000620219 DHRS12A0PJE2 317 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ATP6V1B1P15313 513 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 EEF1B2P24534 225 aaKnown RBP15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ALDH4A1P30038 563 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 CSRP3P50461 194 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 CTBSQ01459 385 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 MLLT1Q03111 559 aaPredicted RBP15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ZC3H7AQ8IWR0 971 aaKnown RBP15.18■□□□□ 0.02
CPSF1-213ENST00000620219 OR5AK3PQ8NH89 298 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 SPPL2AQ8TCT8 520 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 NRTNQ99748 197 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 REXO4Q9GZR2 422 aaKnown RBP15.18■□□□□ 0.02
CPSF1-213ENST00000620219 SMOXQ9NWM0 555 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 GPR34Q9UPC5 381 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 DLGAP4Q9Y2H0 992 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 KNTC1P50748 2209 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 FASP25445 335 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 MANFP55145 182 aaKnown RBP15.18■□□□□ 0.02
CPSF1-213ENST00000620219 TAS2R50P59544 299 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ENDOVQ8N8Q3 282 aaKnown RBP15.18■□□□□ 0.02
CPSF1-213ENST00000620219 OR2T34Q8NGX1 318 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 INSM2Q96T92 566 aaPredicted RBP15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ATAD3AQ9NVI7 634 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ORC6Q9Y5N6 252 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 CROCCQ5TZA2 2017 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 NDUFS4O43181 175 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 DFNA5O60443 496 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ATP6V1C1P21283 382 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 CD9P21926 228 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 DHPSP49366 369 aaPredicted RBP15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ZNF423Q2M1K9 1284 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 PIGGQ5H8A4 983 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 PDZD3Q86UT5 571 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 LMX1AQ8TE12 382 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ROPN1LQ96C74 230 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 DUSP26Q9BV47 211 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 USP22Q9UPT9 525 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 LRCH1Q9Y2L9 728 aa15.18■□□□□ 0.02
CPSF1-213ENST00000620219 ERI3O43414 337 aaKnown RBP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 CDH3P22223 829 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 ARHGDIAP52565 204 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 HSPB3Q12988 150 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 LIPJQ5W064 366 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 ADNP2Q6IQ32 1131 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms