RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MANBAO00462 879 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 INSIG1O15503 277 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 RPLP0P05388 317 aaKnown RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 PAX3P23760 479 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 ARMC12Q5T9G4 340 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 NEK10Q6ZWH5 1172 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 TSPYL5Q86VY4 417 aaPredicted RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 VANGL1Q8TAA9 524 aaPredicted RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 TIGARQ9NQ88 270 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 TNPO3Q9Y5L0 923 aaKnown RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 ZFP37Q9Y6Q3 630 aaPredicted RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 FAM220BPB1ANY3 271 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 CLIC1O00299 241 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 GFRA2O00451 464 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 TM4SF4P48230 202 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 MXD1Q05195 221 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 AGAP6Q5VW22 663 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 ADAMTSL2Q86TH1 951 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 GALNT12Q8IXK2 581 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 ELMOD1Q8N336 334 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 KCNJ9Q92806 393 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 GGHQ92820 318 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 TADA1Q96BN2 335 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 AGAP4Q96P64 663 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 OR5M11Q96RB7 305 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 CITED4Q96RK1 184 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 CLPBQ9H078 707 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 TM9SF3Q9HD45 589 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 CCNB1IP1Q9NPC3 277 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 PCDHGA6Q9Y5G7 932 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 CLDN24A6NM45 220 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 KIAA0513O60268 411 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 CSF2P04141 144 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 IRF1P10914 325 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 KEAP1Q14145 624 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 PARP15Q460N3 678 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 ATG9BQ674R7 924 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 PNCKQ6P2M8 343 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 APIPQ96GX9 242 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 TRNT1Q96Q11 434 aaKnown RBP17.79■□□□□ 0.44
UPF1-210ENST00000600689 FEVQ99581 238 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 TM6SF2Q9BZW4 377 aa17.79■□□□□ 0.44
UPF1-210ENST00000600689 COL4A4P53420 1690 aaPredicted RBP17.79■□□□□ 0.44
UPF1-210ENST00000600689 CENPXA8MT69 81 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 TACR2P21452 398 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 SLC15A1P46059 708 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 ACLYP53396 1101 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 TSTQ16762 297 aaKnown RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 ARMC4Q5T2S8 1044 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 ATXN7L2Q5T6C5 722 aaPredicted RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 GLB1LQ6UWU2 654 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 LACC1Q8IV20 430 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 ASCC1Q8N9N2 400 aaKnown RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 FBLIM1Q8WUP2 373 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 CNPPD1Q9BV87 410 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 MOV10Q9HCE1 1003 aaKnown RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 PNMA8CA0A1B0GUJ8 204 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 ANKRD66B4E2M5 251 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 F5H5T6 163 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 FPGTO14772 594 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 PTTG1O95997 202 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 EPB42P16452 691 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 HOXD9P28356 352 aaPredicted RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 MRPL19P49406 292 aaKnown RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 ST3GAL4Q11206 333 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 LRRC26Q2I0M4 334 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 PROX2Q3B8N5 592 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 TBRG1Q3YBR2 411 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 ZC3H12BQ5HYM0 836 aaKnown RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 TRIM48Q8IWZ4 208 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 UBASH3BQ8TF42 649 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 DHRS1Q96LJ7 313 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 ELOVL6Q9H5J4 265 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 BNIP3LO60238 219 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 CCNDBP1O95273 360 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 FHP07954 510 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 ACPPP15309 386 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 SLC6A4P31645 630 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 GKP32189 559 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 KDELR2P33947 212 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 ELP6Q0PNE2 266 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 CAMK2BQ13554 666 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 IRF3Q14653 427 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 PCBP2Q15366 365 aaKnown RBP eCLIP17.78■□□□□ 0.44
UPF1-210ENST00000600689 LRRC66Q68CR7 880 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 GTPBP3Q969Y2 492 aaKnown RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 UROC1Q96N76 676 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 FAM126AQ9BYI3 521 aaPredicted RBP17.78■□□□□ 0.44
UPF1-210ENST00000600689 MAGIXQ9H6Y5 334 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 PCDHB8Q9UN66 801 aa17.78■□□□□ 0.44
UPF1-210ENST00000600689 SLC28A1O00337 649 aa17.77■□□□□ 0.44
UPF1-210ENST00000600689 GATMP50440 423 aa17.77■□□□□ 0.44
UPF1-210ENST00000600689 NKX3-2P78367 333 aa17.77■□□□□ 0.44
UPF1-210ENST00000600689 CCDC58Q4VC31 144 aa17.77■□□□□ 0.44
UPF1-210ENST00000600689 ARMCX6Q7L4S7 300 aa17.77■□□□□ 0.44
UPF1-210ENST00000600689 SERPINA9Q86WD7 417 aa17.77■□□□□ 0.44
UPF1-210ENST00000600689 OR6F1Q8NGZ6 308 aa17.77■□□□□ 0.44
UPF1-210ENST00000600689 FYTTD1Q96QD9 318 aaKnown RBP17.77■□□□□ 0.44
UPF1-210ENST00000600689 GIMAP4Q9NUV9 329 aa17.77■□□□□ 0.44
UPF1-210ENST00000600689 ERN1O75460 977 aaKnown RBP17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms