RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SLC15A1P46059 708 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 GBX1Q14549 363 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 LRRC66Q68CR7 880 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 DGCR14Q96DF8 476 aaKnown RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 TMEM209Q96SK2 561 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 MTERF1Q99551 399 aaKnown RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 NPAS2Q99743 824 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 CIDEBQ9UHD4 219 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 NPIPA2E9PIF3 369 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 NPIPA3F8WFD2 350 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 TIMP1P01033 207 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 PABPC4LP0CB38 370 aaKnown RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 SCRN3Q0VDG4 424 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 GPR68Q15743 365 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 RBM12BQ8IXT5 1001 aaKnown RBP19.92■□□□□ 0.78
UPF1-207ENST00000599848 CA14Q9ULX7 337 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 HS3ST4Q9Y661 456 aa19.92■□□□□ 0.78
UPF1-207ENST00000599848 PVALBP20472 110 aaPredicted RBP19.91■□□□□ 0.78
UPF1-207ENST00000599848 MLC1Q15049 377 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 PLET1Q6UQ28 207 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 TDRPQ86YL5 185 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 ZDHHC14Q8IZN3 488 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 PCDH19Q8TAB3 1148 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 RAB9BQ9NP90 201 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 TELO2Q9Y4R8 837 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 SNX10Q9Y5X0 201 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 A0A1B0GVI7 797 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 HTR3EA5X5Y0 456 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 CPSF4LA6NMK7 179 aaKnown RBP19.91■□□□□ 0.78
UPF1-207ENST00000599848 L7N2F9 121 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 PGAM2P15259 253 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 ITGA3P26006 1051 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 BMP8BP34820 402 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 VAMP2P63027 116 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 OCLNQ16625 522 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 TNFAIP8L2Q6P589 184 aaPredicted RBP19.91■□□□□ 0.78
UPF1-207ENST00000599848 BMP8AQ7Z5Y6 402 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 NRROSQ86YC3 692 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 KLHL36Q8N4N3 616 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 C9orf43Q8TAL5 461 aaPredicted RBP19.91■□□□□ 0.78
UPF1-207ENST00000599848 EIF3KQ9UBQ5 218 aaKnown RBP19.91■□□□□ 0.78
UPF1-207ENST00000599848 FTSJ1Q9UET6 329 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 HCN2Q9UL51 889 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 ARL5AQ9Y689 179 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 AREL1O15033 823 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 PRAMEF11O60813 436 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 ZMPSTE24O75844 475 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 AK1P00568 194 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 SLC25A25Q6KCM7 469 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 ZNF227Q86WZ6 799 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 CCDC107Q8WV48 283 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 FAM3CQ92520 227 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 DUOX1Q9NRD9 1551 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 PLOD3O60568 738 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 P04436 131 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 RPL10P27635 214 aaKnown RBP19.91■□□□□ 0.78
UPF1-207ENST00000599848 TMEM198Q66K66 360 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 C6orf120Q7Z4R8 191 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 LIX1LQ8IVB5 337 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 ARHGAP12Q8IWW6 846 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 NETO2Q8NC67 525 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 TNFAIP8L1Q8WVP5 186 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 CENPNQ96H22 339 aaPredicted RBP19.91■□□□□ 0.78
UPF1-207ENST00000599848 TRIB3Q96RU7 358 aa19.91■□□□□ 0.78
UPF1-207ENST00000599848 KDM4BO94953 1096 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 TBX18O95935 607 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 RNH1P13489 461 aaKnown RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 IMPDH1P20839 514 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 MC1RQ01726 317 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 IL18Q14116 193 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 SATL1Q86VE3 508 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 OR4K14Q8NGD5 310 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 OR6C4Q8NGE1 309 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 OMA1Q96E52 524 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 FAM120CQ9NX05 1096 aaKnown RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 MROH1Q8NDA8 1641 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 SAGE2PA6NJ88 616 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 PIP5K1BO14986 540 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 ABCB7O75027 752 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 KRT36O76013 467 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 CER1O95813 267 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 HLA-DQB2P05538 268 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 OR4D2P58180 307 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 TARDBPQ13148 414 aaKnown RBP eCLIP19.9■□□□□ 0.784e-11■■■□□ 19.2
UPF1-207ENST00000599848 DSG2Q14126 1118 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 KIAA0319Q5VV43 1072 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 PQLC1Q8N2U9 271 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 LRRN4Q8WUT4 740 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 ALG3Q92685 438 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 MMABQ96EY8 250 aaPredicted RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 BORCS8Q96FH0 119 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 ZNF570Q96NI8 536 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 IFNA21P01568 189 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 MAPK3P27361 379 aaPredicted RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 ZNF630Q2M218 657 aaPredicted RBP19.9■□□□□ 0.78
UPF1-207ENST00000599848 REP15Q6BDI9 236 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 AMIGO2Q86SJ2 522 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 ZNF100Q8IYN0 542 aa19.9■□□□□ 0.78
UPF1-207ENST00000599848 FAM174AQ8TBP5 190 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms