RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 HERC4Q5GLZ8 1057 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 ZC2HC1BQ5TFG8 222 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 SNX30Q5VWJ9 437 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 TMEM81Q6P7N7 255 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 VPS36Q86VN1 386 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 GBP7Q8N8V2 638 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 FAM133AQ8N9E0 248 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 MAPK1IP1LQ8NDC0 245 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 TNIP2Q8NFZ5 429 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 OLIG1Q8TAK6 271 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 HMGCLL1Q8TB92 370 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 ATP8B4Q8TF62 1192 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 UBLCP1Q8WVY7 318 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 CRYGNQ8WXF5 182 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 ZNF622Q969S3 477 aaKnown RBP eCLIP3.81□□□□□ -1.83e-10■■■□□ 14.7
SMCHD1-208ENST00000583344 MAGOHBQ96A72 148 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 CNDP2Q96KP4 475 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 SPATA17Q96L03 361 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 FAM20AQ96MK3 541 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 LBHD1Q9BQE6 289 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 DDX47Q9H0S4 455 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 STMN4Q9H169 189 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 RABEP2Q9H5N1 569 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 FKRPQ9H9S5 495 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 DMAC2Q9NW81 257 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 HSPB7Q9UBY9 170 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 ARMCX3Q9UH62 379 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 AMACRQ9UHK6 382 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 RPS6KA6Q9UK32 745 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 CAMK2AQ9UQM7 478 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 TMEM5Q9Y2B1 443 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 MYH10P35580 1976 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 MYH1P12882 1939 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 CCDC88AQ3V6T2 1871 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 MAST2Q6P0Q8 1798 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 CASZ1Q86V15 1759 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 COL4A1P02462 1669 aa3.81□□□□□ -1.8
SMCHD1-208ENST00000583344 COL2A1P02458 1487 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TAF1P21675 1872 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 PFASO15067 1338 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 MYO3BQ8WXR4 1341 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 hCG_1807616A0A1W2PRN6 198 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TEX22C9J3V5 150 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 E9PMD0 336 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 BLOC1S5-TXNDC5H3BN57 136 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 O00370 1275 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 LIN7AO14910 233 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 EIF3DO15371 548 aaKnown RBP eCLIP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TTI1O43156 1089 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TGFB1I1O43294 461 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SNX3O60493 162 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TDP2O95551 362 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 OAS1P00973 400 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TFP02787 698 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 INHBAP08476 426 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 GOLGA8HP0CJ92 632 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 GZMAP12544 262 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 NQO1P15559 274 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 GAP43P17677 238 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 CHRNA3P32297 505 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 HPDP32754 393 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 GGT5P36269 586 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 DCTP40126 519 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 ZNF131P52739 623 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SLC18A1P54219 525 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SORDQ00796 357 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 PLIN5Q00G26 463 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 DR1Q01658 176 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 MC1RQ01726 317 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 GABPAQ06546 454 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 CDC16Q13042 620 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 ZNF234Q14588 700 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 RASA2Q15283 850 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 RNPS1Q15287 305 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TBCEQ15813 527 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 BAK1Q16611 211 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 CMPK2Q5EBM0 449 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 FAM69AQ5T7M9 428 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 DUS1LQ6P1R4 473 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 FAM171BQ6P995 826 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SLC22A25Q6T423 547 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TRMT10CQ7L0Y3 403 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 LRRC8DQ7L1W4 858 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 ASRGL1Q7L266 308 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 KRT74Q7RTS7 529 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TRPM8Q7Z2W7 1104 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 VSIG1Q86XK7 387 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 DZIP1Q86YF9 867 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 APLFQ8IW19 511 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 LRRC34Q8IZ02 419 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 PCDH20Q8N6Y1 951 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 CCDC63Q8NA47 563 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 C11orf65Q8NCR3 313 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TBC1D16Q8TBP0 767 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TCP11Q8WWU5 503 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SLCO2A1Q92959 643 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 ART4Q93070 314 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 PIGTQ969N2 578 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SLC35C1Q96A29 364 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 VMP1Q96GC9 406 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms