RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CPAMD8Q8IZJ3 1885 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 A0A0J9YVX5 310 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 H0YIG0 161 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 CDK2AP1O14519 115 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 ZSCAN12O43309 604 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 KIF5CO60282 957 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 AGFG2O95081 481 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 C8GP07360 202 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 ICAM2P13598 275 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 ACPPP15309 386 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 PGAM1P18669 254 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 FBLP22087 321 aaKnown RBP13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 ITGA3P26006 1051 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 SLC1A2P43004 574 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 OR1D4P47884 311 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 UQCRFS1P47985 274 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 RGS4P49798 205 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 ILF2Q12905 390 aaKnown RBP13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 FRG1Q14331 258 aaKnown RBP13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 TLR1Q15399 786 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 INAQ16352 499 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 NDUFA9Q16795 377 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 RNASEH2BQ5TBB1 312 aaKnown RBP13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 ISLR2Q6UXK2 745 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 NDUFAF7Q7L592 441 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 CSNK1A1LQ8N752 337 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 C2CD4AQ8NCU7 369 aaPredicted RBP13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 LRRC39Q96DD0 335 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 CCDC138Q96M89 665 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 OSBPL9Q96SU4 736 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 AARSD1Q9BTE6 412 aaKnown RBP13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 DRC3Q9H069 523 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 RNF32Q9H0A6 362 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 EPS8L2Q9H6S3 715 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 TAS2R13Q9NYV9 303 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 CIDEBQ9UHD4 219 aa13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 COPG1Q9Y678 874 aaKnown RBP13.8□□□□□ -0.2
SMARCE1-216ENST00000580419 MAP2K7O14733 419 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 MED26O95402 600 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 VPS41P49754 854 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 RPS15AP62244 130 aaKnown RBP13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 MFAP5Q13361 173 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 CTBP1Q13363 440 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 SYDE1Q6ZW31 735 aaPredicted RBP13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 CUZD1Q86UP6 607 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 DENND6AQ8IWF6 608 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 KBTBD2Q8IY47 623 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 AGGF1Q8N302 714 aaeCLIP13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 ST6GALNAC3Q8NDV1 305 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 MCOLN3Q8TDD5 553 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 CABS1Q96KC9 395 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 RUNDC3BQ96NL0 473 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 SLC30A3Q99726 388 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 C20orf96Q9NUD7 363 aaPredicted RBP13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 TAC3Q9UHF0 121 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 C3orf18Q9UK00 162 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 SNX12Q9UMY4 172 aa13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 RUVBL1Q9Y265 456 aaKnown RBP13.79□□□□□ -0.2
SMARCE1-216ENST00000580419 CELSR2Q9HCU4 2923 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 BLACEA4D250 179 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 CYSRT1A8MQ03 144 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 IDSB3KWA1 339 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 BMP10O95393 424 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 NSA2O95478 260 aaKnown RBP13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 SERPINA7P05543 415 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 TCP1P17987 556 aaKnown RBP13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 IL10P22301 178 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 CXCR2P25025 360 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 IMPA1P29218 277 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 SOX11P35716 441 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 AP1S2P56377 157 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 CRYMQ14894 314 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 SPANXN3Q5MJ09 141 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 NIPAL1Q6NVV3 410 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 TMEM205Q6UW68 189 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 SUSD1Q6UWL2 747 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 STRA8Q7Z7C7 330 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 KCNMB4Q86W47 210 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 AMER3Q8N944 861 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 ANKRD7Q92527 254 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 HAS2Q92819 552 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 PDLIM5Q96HC4 596 aaKnown RBP13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 MS4A14Q96JA4 679 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 GPR21Q99679 349 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 ACAT2Q9BWD1 397 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 MFRPQ9BY79 579 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 SOX17Q9H6I2 414 aaPredicted RBP13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 PARVBQ9HBI1 364 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 CCDC177Q9NQR7 707 aaPredicted RBP13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 RIC8BQ9NVN3 520 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 ASF1BQ9NVP2 202 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 NOVA2Q9UNW9 492 aaKnown RBP13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 MAD1L1Q9Y6D9 718 aa13.78□□□□□ -0.2
SMARCE1-216ENST00000580419 DNALI1O14645 258 aaPredicted RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 FOXS1O43638 330 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 HAUS5O94927 633 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 EIF2S1P05198 315 aaKnown RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 ANXA5P08758 320 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 COX6A1P12074 109 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms