RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RPS17P08708 135 aaKnown RBP20.87■□□□□ 0.93
SNX1-210ENST00000560260 FGF5P12034 268 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 VARSP26640 1264 aaKnown RBP20.87■□□□□ 0.93
SNX1-210ENST00000560260 MEF2AQ02078 507 aaPredicted RBP20.87■□□□□ 0.93
SNX1-210ENST00000560260 COL9A2Q14055 689 aaPredicted RBP20.87■□□□□ 0.93
SNX1-210ENST00000560260 PDK4Q16654 411 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 PRAMEF17Q5VTA0 474 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 NXPE4Q6UWF7 544 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 ZYG11AQ6WRX3 759 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 SLCO4C1Q6ZQN7 724 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 RPS27LQ71UM5 84 aaKnown RBP20.87■□□□□ 0.93
SNX1-210ENST00000560260 SNX31Q8N9S9 440 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 ZNF740Q8NDX6 193 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 OR4K1Q8NGD4 311 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 NSUN5Q96P11 429 aaKnown RBP20.87■□□□□ 0.93
SNX1-210ENST00000560260 TAAR9Q96RI9 348 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 RUFY1Q96T51 708 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 TMEM184CQ9NVA4 438 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 OPTCQ9UBM4 332 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 PCDHGA3Q9Y5H0 932 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 E2F3O00716 465 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 POLR1CO15160 346 aaPredicted RBP20.86■□□□□ 0.93
SNX1-210ENST00000560260 ATP5F1P24539 256 aaPredicted RBP20.86■□□□□ 0.93
SNX1-210ENST00000560260 CYP4F3Q08477 520 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 NAA25Q14CX7 972 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 CCDC153Q494R4 210 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 MCATQ8IVS2 390 aaKnown RBP20.86■□□□□ 0.93
SNX1-210ENST00000560260 TEX9Q8N6V9 391 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 ARMC2Q8NEN0 867 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 TCP10LQ8TDR4 215 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 ARL8AQ96BM9 186 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 TLCD1Q96CP7 247 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 MOCOSQ96EN8 888 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 FAM111AQ96PZ2 611 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 TMEM237Q96Q45 408 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 ZFYVE21Q9BQ24 234 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 DDA1Q9BW61 102 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 VIPAS39Q9H9C1 493 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 PELI2Q9HAT8 420 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 GPRC5BQ9NZH0 403 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 PCTPQ9UKL6 214 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 RARRES3Q9UL19 164 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 PLCL2Q9UPR0 1127 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 KCNE2Q9Y6J6 123 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 AK5Q9Y6K8 562 aa20.86■□□□□ 0.93
SNX1-210ENST00000560260 LOC105369274A0A096LPK9 316 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 LOC102723532A0A0G2JNH3 316 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 FEZF1A0PJY2 475 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 EZRP15311 586 aaKnown RBP20.85■□□□□ 0.93
SNX1-210ENST00000560260 ZNF28P17035 718 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 CD22P20273 847 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 TAC1P20366 129 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 HRH2P25021 359 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 BCL6P41182 706 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 CCR8P51685 355 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 RAB15P59190 212 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 REEP5Q00765 189 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 GOLGA7Q7Z5G4 137 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 OR4N4Q8N0Y3 316 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 MDM1Q8TC05 714 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 ZNF285Q96NJ3 590 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 OR2A5Q96R48 311 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 SPRTNQ9H040 489 aaPredicted RBP20.85■□□□□ 0.93
SNX1-210ENST00000560260 ZBTB26Q9HCK0 441 aa20.85■□□□□ 0.93
SNX1-210ENST00000560260 MDC1Q14676 2089 aaKnown RBP20.85■□□□□ 0.93
SNX1-210ENST00000560260 LCMT2O60294 686 aaKnown RBP20.84■□□□□ 0.93
SNX1-210ENST00000560260 SPTBP11277 2137 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 RBMS1P29558 406 aaKnown RBP20.84■□□□□ 0.93
SNX1-210ENST00000560260 SLC5A2P31639 672 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 PRKAA2P54646 552 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 GTF2H2Q13888 395 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 MPP2Q14168 576 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 IL11RAQ14626 422 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 PCLAFQ15004 111 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 PWWP2BQ6NUJ5 590 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 GTF2H2CQ6P1K8 395 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 CEACAM20Q6UY09 585 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 VN1R4Q7Z5H5 301 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 PPP1R3BQ86XI6 285 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 ZNF483Q8TF39 744 aaPredicted RBP20.84■□□□□ 0.93
SNX1-210ENST00000560260 SH3GL2Q99962 352 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 C1QTNF3Q9BXJ4 246 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 SSU72Q9NP77 194 aaKnown RBP20.84■□□□□ 0.93
SNX1-210ENST00000560260 PCDHGA7Q9Y5G6 932 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 TNPO3Q9Y5L0 923 aaKnown RBP20.84■□□□□ 0.93
SNX1-210ENST00000560260 ACTL7BQ9Y614 415 aa20.84■□□□□ 0.93
SNX1-210ENST00000560260 H0YGG7 62 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 P2RX6O15547 441 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 MAP3K7O43318 606 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 STATHP02808 62 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 CAPNS1P04632 268 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 C1GALT1C1LP0DN25 315 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 MYL2P10916 166 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 GNAZP19086 355 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 VSX2P58304 361 aaPredicted RBP20.83■□□□□ 0.93
SNX1-210ENST00000560260 ARF3P61204 181 aaPredicted RBP20.83■□□□□ 0.93
SNX1-210ENST00000560260 RELAQ04206 551 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 DOC2AQ14183 400 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 E2F2Q14209 437 aa20.83■□□□□ 0.93
SNX1-210ENST00000560260 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms