RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 LY6DQ14210 128 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 IL11RAQ14626 422 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 TAB1Q15750 504 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 FAM189A2Q15884 450 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 SLC25A30Q5SVS4 291 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 KRT39Q6A163 491 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 MZT2BQ6NZ67 158 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 FCRLAQ7L513 359 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 DET1Q7L5Y6 550 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 ADGRA1Q86SQ6 560 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 C11orf53Q8IXP5 236 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 SLC39A11Q8N1S5 342 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 POM121L12Q8N7R1 296 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 SLC4A11Q8NBS3 891 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 C9orf43Q8TAL5 461 aaPredicted RBP3.1□□□□□ -1.91
SCFD1-216ENST00000555550 C11orf45Q8TAV5 145 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 CHPT1Q8WUD6 406 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 KCNE4Q8WWG9 221 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 LGMNQ99538 433 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 RPP25Q9BUL9 199 aaKnown RBP3.1□□□□□ -1.91
SCFD1-216ENST00000555550 TDRD1Q9BXT4 1180 aaKnown RBP3.1□□□□□ -1.91
SCFD1-216ENST00000555550 CDH20Q9HBT6 801 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 PIH1D3Q9NQM4 214 aaKnown RBP3.1□□□□□ -1.91
SCFD1-216ENST00000555550 OLAHQ9NV23 265 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 WIPI2Q9Y4P8 454 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 IGSF1Q8N6C5 1336 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 TRBV4-1A0A0J9YWV2 114 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 SNX3O60493 162 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 RPS6KA5O75582 802 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 POP4O95707 220 aaKnown RBP3.09□□□□□ -1.91
SCFD1-216ENST00000555550 STARD3NLO95772 234 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 SAGP10523 405 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-216ENST00000555550 ELAVL4P26378 380 aaKnown RBP3.09□□□□□ -1.91
SCFD1-216ENST00000555550 CETN2P41208 172 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 ASCL1P50553 236 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 IRX4P78413 519 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 DHODHQ02127 395 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 GPR33Q49SQ1 333 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 HIGD2BQ4VC39 106 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 SPATA1Q5VX52 437 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 CTR9Q6PD62 1173 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 GDPGP1Q6ZNW5 385 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 LINC00612Q8N6U2 182 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 TC2NQ8N9U0 490 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 TDRD5Q8NAT2 981 aaKnown RBP3.09□□□□□ -1.91
SCFD1-216ENST00000555550 C17orf47Q8NEP4 570 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 CNRIP1Q96F85 164 aaPredicted RBP3.09□□□□□ -1.91
SCFD1-216ENST00000555550 C2orf48Q96LS8 159 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 Q9H8V8 135 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.09□□□□□ -1.91
SCFD1-216ENST00000555550 LNPEPQ9UIQ6 1025 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 ZNF510Q9Y2H8 683 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 TRPV2Q9Y5S1 764 aa3.09□□□□□ -1.91
SCFD1-216ENST00000555550 TRBV5-5A0A0J9YX44 114 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 EDDM13A0A1B0GTR0 161 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 A0A1W2PPM1 405 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 ACOD1A6NK06 481 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 ADAM20O43506 726 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 AHCYL1O43865 530 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 KRT33AO76009 404 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 GP1BBP13224 206 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 ITIH1P19827 911 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 CD22P20273 847 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 EEF1B2P24534 225 aaKnown RBP3.08□□□□□ -1.92
SCFD1-216ENST00000555550 CD27P26842 260 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 OR3A2P47893 321 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 FCHO2Q0JRZ9 810 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 PTPRCAPQ14761 206 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 OPCMLQ14982 345 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 VWC2Q2TAL6 325 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 WDR78Q5VTH9 848 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 GARNL3Q5VVW2 1013 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 CDHR3Q6ZTQ4 885 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 SLC24A5Q71RS6 500 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 CENPVQ7Z7K6 275 aaPredicted RBP3.08□□□□□ -1.92
SCFD1-216ENST00000555550 SLC47A2Q86VL8 602 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 ZFAND4Q86XD8 727 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 ABHD12Q8N2K0 398 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 FAM89BQ8N5H3 189 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 NPRL2Q8WTW4 380 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 PROX1Q92786 737 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 PDLIM5Q96HC4 596 aaKnown RBP3.08□□□□□ -1.92
SCFD1-216ENST00000555550 MAP3K3Q99759 626 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 CPNE1Q99829 537 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 SLC2A11Q9BYW1 496 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 MTHFD2LQ9H903 347 aaPredicted RBP3.08□□□□□ -1.92
SCFD1-216ENST00000555550 GPR83Q9NYM4 423 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 TBC1D7Q9P0N9 293 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 TXNDC16Q9P2K2 825 aa3.08□□□□□ -1.92
SCFD1-216ENST00000555550 MYH14Q7Z406 1995 aaKnown RBP3.07□□□□□ -1.92
SCFD1-216ENST00000555550 IGLV3-10A0A075B6K4 115 aa3.07□□□□□ -1.92
SCFD1-216ENST00000555550 A0A1W2PPR1 153 aa3.07□□□□□ -1.92
SCFD1-216ENST00000555550 TCRBV21S2A2A0A5A6 115 aa3.07□□□□□ -1.92
SCFD1-216ENST00000555550 CEACAM4O75871 244 aa3.07□□□□□ -1.92
SCFD1-216ENST00000555550 PGM3O95394 542 aa3.07□□□□□ -1.92
SCFD1-216ENST00000555550 AZGP1P25311 298 aaKnown RBP3.07□□□□□ -1.92
SCFD1-216ENST00000555550 CCR3P51677 355 aa3.07□□□□□ -1.92
SCFD1-216ENST00000555550 LIMK2P53671 638 aa3.07□□□□□ -1.92
SCFD1-216ENST00000555550 DCDC1P59894 354 aa3.07□□□□□ -1.92
SCFD1-216ENST00000555550 POLR2LP62875 67 aaKnown RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms