RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 SAA2-SAA4A0A096LPE2 208 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 RNF103-CHMP3A0A140T963 221 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 KRTAP29-1A8MX34 341 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 C17orf105B2RV13 164 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 RNF103O00237 685 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 O00370 1275 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 LETM1O95202 739 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 ZBTB11O95625 1053 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 APOHP02749 345 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 SBK2P0C263 348 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 DLATP10515 647 aaKnown RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 FGF5P12034 268 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 EFNA1P20827 205 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CDH3P22223 829 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 EPHA2P29317 976 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 NR2C2P49116 596 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 HOXA1P49639 335 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 LUMP51884 338 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CDH11P55287 796 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 DSCR9P59020 149 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 PITX1P78337 314 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 SLC34A1Q06495 639 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CETN1Q12798 172 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 MAPK11Q15759 364 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 TOR1AIP1Q5JTV8 583 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 SIRPB2Q5JXA9 342 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 PDSS1Q5T2R2 415 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 AGAP6Q5VW22 663 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 FUT10Q6P4F1 479 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 ZNF852Q6ZMS4 543 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 FAM43BQ6ZT52 329 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 TOM1L2Q6ZVM7 507 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 BHLHA9Q7RTU4 235 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 MIER3Q7Z3K6 550 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 SLC9B2Q86UD5 537 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 ZNF410Q86VK4 478 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 ERC1Q8IUD2 1116 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 SERPINA12Q8IW75 414 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CDK20Q8IZL9 346 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 EID3Q8N140 333 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 HDDC3Q8N4P3 179 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 TEX9Q8N6V9 391 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CCDC63Q8NA47 563 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CLEC1AQ8NC01 280 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 OR52N5Q8NH56 324 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 SORCS1Q8WY21 1168 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 TSACCQ96A04 125 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 SLC47A1Q96FL8 570 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 SCRN2Q96FV2 425 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CFAP36Q96G28 342 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CCDC3Q9BQI4 270 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 TMEM204Q9BSN7 226 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 FSD1Q9BTV5 496 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 ACPTQ9BZG2 426 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 MTMR12Q9C0I1 747 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 CUEDC2Q9H467 287 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 C10orf88Q9H8K7 445 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 RAB9BQ9NP90 201 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 EPS15L1Q9UBC2 864 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 HOOK1Q9UJC3 728 aaKnown RBP4.63□□□□□ -1.67
SCFD1-209ENST00000553280 STUB1Q9UNE7 303 aa4.63□□□□□ -1.67
SCFD1-209ENST00000553280 LOC101059948A0A1B0GTJ6 334 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 TULP2O00295 520 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 PPP1R3DO95685 299 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 KRT3P12035 628 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 F3P13726 295 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 SSTR1P30872 391 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 CSTF2P33240 577 aaKnown RBP eCLIP4.62□□□□□ -1.67
SCFD1-209ENST00000553280 LINC00205P59089 165 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 GFPT1Q06210 699 aaPredicted RBP4.62□□□□□ -1.67
SCFD1-209ENST00000553280 TRAP1Q12931 704 aaKnown RBP4.62□□□□□ -1.67
SCFD1-209ENST00000553280 PDE7AQ13946 482 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 STXBP2Q15833 593 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 SLC35D3Q5M8T2 416 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 LCE1AQ5T7P2 110 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 PM20D1Q6GTS8 502 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 KLHL10Q6JEL2 608 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 CATSPER4Q7RTX7 472 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 ASPGQ86U10 573 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 MRPL43Q8N983 215 aaKnown RBP4.62□□□□□ -1.67
SCFD1-209ENST00000553280 NEK11Q8NG66 645 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 URGCPQ8TCY9 931 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 SLC13A3Q8WWT9 602 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 XPO4Q9C0E2 1151 aaKnown RBP4.62□□□□□ -1.67
SCFD1-209ENST00000553280 TSPYL1Q9H0U9 437 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 NAPBQ9H115 298 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 PDRG1Q9NUG6 133 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 NINJ2Q9NZG7 142 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 TRIM10Q9UDY6 481 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 TRMT6Q9UJA5 497 aaKnown RBP4.62□□□□□ -1.67
SCFD1-209ENST00000553280 MTF2Q9Y483 593 aaPredicted RBP4.62□□□□□ -1.67
SCFD1-209ENST00000553280 PFASO15067 1338 aa4.62□□□□□ -1.67
SCFD1-209ENST00000553280 MAGEB16A2A368 324 aa4.61□□□□□ -1.67
SCFD1-209ENST00000553280 C2CD4DB7Z1M9 353 aa4.61□□□□□ -1.67
SCFD1-209ENST00000553280 SCO2O43819 266 aa4.61□□□□□ -1.67
SCFD1-209ENST00000553280 PRDM1O75626 825 aa4.61□□□□□ -1.67
SCFD1-209ENST00000553280 STAM2O75886 525 aa4.61□□□□□ -1.67
SCFD1-209ENST00000553280 ALPPP05187 535 aa4.61□□□□□ -1.67
SCFD1-209ENST00000553280 ABHD2P08910 425 aa4.61□□□□□ -1.67
SCFD1-209ENST00000553280 IGHV4-31P0DP07 118 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms