RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 HOXB9P17482 250 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CYP2A7P20853 494 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 UGT2B10P36537 528 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 RPS19P39019 145 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 HTR2BP41595 481 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 IDH2P48735 452 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF140P52738 457 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 UGT2B15P54855 530 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CXCR4P61073 352 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF45Q02386 682 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SMARCB1Q12824 385 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TAF10Q12962 218 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 IL18R1Q13478 541 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 GTF2H2Q13888 395 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SSX1Q16384 188 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SMU1Q2TAY7 513 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 MPPE1Q53F39 396 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 YIF1BQ5BJH7 314 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ARMCX4Q5H9R4 360 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 MS4A13Q5J8X5 152 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SPRYD7Q5W111 196 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 GTF2H2CQ6P1K8 395 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 MSANTD2Q6P1R3 559 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SBSNQ6UWP8 590 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 LINGO4Q6UY18 593 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF517Q6ZMY9 492 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 GLRX5Q86SX6 157 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 DNAJC22Q8N4W6 341 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TTC9BQ8N6N2 239 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 OR7D4Q8NG98 312 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 OR52J3Q8NH60 311 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 LKAAEAR1Q8TD35 194 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 JPH3Q8WXH2 748 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 COQ8BQ96D53 544 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TSSK3Q96PN8 268 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 PTPN18Q99952 460 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CINPQ9BW66 212 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TM6SF2Q9BZW4 377 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 DPY30Q9C005 99 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 KATNBL1Q9H079 304 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CLMPQ9H6B4 373 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CCDC177Q9NQR7 707 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 THUMPD1Q9NXG2 353 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF226Q9NYT6 803 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF490Q9ULM2 529 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 A0A1W2PQ09 198 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 E9PQ18 207 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 F5H5T6 163 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 STX7O15400 261 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 PRLP01236 227 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 PRKAR2AP13861 404 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 MSH3P20585 1137 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 AKT1P31749 480 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 S100A5P33763 92 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SOX3P41225 446 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TUBA1BP68363 451 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 PURAQ00577 322 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ALDH6A1Q02252 535 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SEMG2Q02383 582 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ST3GAL4Q11206 333 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 DUSP4Q13115 394 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TUSC3Q13454 348 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZXDCQ2QGD7 858 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF544Q6NX49 715 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 FBXL22Q6P050 247 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ERAP2Q6P179 960 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TUBA1AQ71U36 451 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF598Q86UK7 904 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ATCAYQ86WG3 371 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 RASAL3Q86YV0 1011 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SLC44A2Q8IWA5 706 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ELMOD2Q8IZ81 293 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 UMODL1-AS1Q8N2C9 162 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CLDN19Q8N6F1 224 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF557Q8N988 423 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SETD9Q8NE22 299 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 OR5H6Q8NGV6 325 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SUN5Q8TC36 379 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 BRSK1Q8TDC3 778 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ASB15Q8WXK1 588 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 EID2BQ96D98 161 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TPD52L3Q96J77 140 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 HSH2DQ96JZ2 352 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 TRIB3Q96RU7 358 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 NIPSNAP1Q9BPW8 284 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CCM2Q9BSQ5 444 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ZYG11BQ9C0D3 744 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 DNMT3LQ9UJW3 386 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 PCDHGC4Q9Y5F7 938 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CFAP20Q9Y6A4 193 aaKnown RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 RANBP2P49792 3224 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 COL4A4P53420 1690 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GREB1Q4ZG55 1949 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GLTPD2A6NH11 291 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 LOC730098B7Z3J9 87 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RGS5O15539 181 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RPLP0P05388 317 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CDK1P06493 297 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RPL17P18621 184 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 OR1E2P47887 323 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms