RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ILVBLA1L0T0 632 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TCAF2A6NFQ2 919 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 AQP12BA6NM10 295 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 PPP6CO00743 305 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TGM5O43548 720 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 SIGLEC6O43699 453 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CTPS1P17812 591 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ITIH1P19827 911 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 OXTRP30559 389 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TALDO1P37837 337 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 PNPLA4P41247 253 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 HERC3Q15034 1050 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 KCNA10Q16322 511 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 FAM187BQ17R55 369 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TPRG1LQ5T0D9 272 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF773Q6PK81 442 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CCBE1Q6UXH8 406 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CASP12Q6UXS9 341 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CIR1Q86X95 450 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZDHHC21Q8IVQ6 265 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 AQP12AQ8IXF9 295 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 DTX3Q8N9I9 347 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZFP90Q8TF47 636 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 FBXO32Q969P5 355 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 IL4I1Q96RQ9 567 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 GPR20Q99678 358 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 KCNJ15Q99712 375 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 BARD1Q99728 777 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 SIAEQ9HAT2 523 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CD320Q9NPF0 282 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 PIGVQ9NUD9 493 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 MOCS1Q9NZB8 636 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ERVK-18Q9QC07 812 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 PADI4Q9UM07 663 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 RNF11Q9Y3C5 154 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 NYNRINQ9P2P1 1898 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 RGS14O43566 566 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 EPN2O95208 641 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 THP07101 528 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ASGR2P07307 311 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 AGXTP21549 392 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ARL2P36404 184 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 HPCAL1P37235 193 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 RECQLP46063 649 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 MECP2P51608 486 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CSNK2BP67870 215 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 RNF4P78317 190 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 SULT2A1Q06520 285 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CD300CQ08708 224 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 HNRNPDQ14103 355 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF267Q14586 743 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CRY1Q16526 586 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 LCE2CQ5TA81 110 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF549Q6P9A3 640 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 SLC27A1Q6PCB7 646 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 PAQR3Q6TCH7 311 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TMPRSS11AQ6ZMR5 421 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 OVCH1Q7RTY7 1134 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 STK40Q8N2I9 435 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 UBL7Q96S82 380 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF347Q96SE7 839 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 GBA3Q9H227 469 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CTPS2Q9NRF8 586 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ERVK13-1Q9NX77 482 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZDHHC7Q9NXF8 308 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 COMMD3Q9UBI1 195 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 RIMS3Q9UJD0 308 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 RAB23Q9ULC3 237 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ERGIC3Q9Y282 383 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 HSPB11Q9Y547 144 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 LYVE1Q9Y5Y7 322 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZFC3H1O60293 1989 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 LOC100130705A0A1B0GUX0 176 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CCDC162PA2VCL2 907 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 FAM72CH0Y354 149 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 I3L521 148 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 HAT1O14929 419 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 GRID2O43424 1007 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 BCAS1O75363 584 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 EFEMP2O95967 443 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 DNTTP04053 509 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 FYNP06241 537 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 IQCF3P0C7M6 154 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 COL6A2P12110 1019 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 DDX5P17844 614 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 POLR2IP36954 125 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 HNF4AP41235 474 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 GDF5P43026 501 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 PRKAG1P54619 331 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 SPIBQ01892 262 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ACSM2AQ08AH3 577 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 COX10Q12887 443 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 KRT33BQ14525 404 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 DPYSL2Q16555 572 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TIGD6Q17RP2 521 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TYSND1Q2T9J0 566 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 C4orf46Q504U0 113 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 INTS11Q5TA45 600 aaKnown RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms