RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZNF460Q14592 562 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 NKG7Q16617 165 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 HKDC1Q2TB90 917 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 ZDHHC24Q6UX98 284 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 ASB18Q6ZVZ8 466 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 MED25Q71SY5 747 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 PPP1R32Q7Z5V6 425 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 ADCK2Q7Z695 626 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 CSNK1A1LQ8N752 337 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 TMEM102Q8N9M5 508 aaPredicted RBP14.11□□□□□ -0.15
USP28-204ENST00000537642 FBXO25Q8TCJ0 367 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 PDLIM5Q96HC4 596 aaKnown RBP14.11□□□□□ -0.15
USP28-204ENST00000537642 PRAP1Q96NZ9 151 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 SPSB2Q99619 263 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 SGPP1Q9BX95 441 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 TRIM4Q9C037 500 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 PCBD2Q9H0N5 130 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 RAB17Q9H0T7 212 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 SLC26A1Q9H2B4 701 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 RHOJQ9H4E5 214 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 WDR54Q9H977 334 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 MLXIPLQ9NP71 852 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 TMEM184CQ9NVA4 438 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 NSMCE4AQ9NXX6 385 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 CTSFQ9UBX1 484 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 ANAPC2Q9UJX6 822 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 RUVBL1Q9Y265 456 aaKnown RBP14.11□□□□□ -0.15
USP28-204ENST00000537642 PCDHGA9Q9Y5G4 932 aaKnown RBP14.11□□□□□ -0.15
USP28-204ENST00000537642 P2RX6O15547 441 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 C1QAP02745 245 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 HIST1H2AGP0C0S8 130 aaPredicted RBP14.1□□□□□ -0.15
USP28-204ENST00000537642 HIST1H2ADP20671 130 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 EMP3P54852 163 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 AP1S2P56377 157 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 GPX6P59796 221 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 CKAP4Q07065 602 aaKnown RBP14.1□□□□□ -0.15
USP28-204ENST00000537642 MUM1Q2TAK8 710 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 COLEC12Q5KU26 742 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 PRMT9Q6P2P2 845 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 SBSNQ6UWP8 590 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 CEP97Q8IW35 865 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 ARHGEF39Q8N4T4 335 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 RERGQ96A58 199 aaPredicted RBP14.1□□□□□ -0.15
USP28-204ENST00000537642 ALKBH8Q96BT7 664 aaKnown RBP14.1□□□□□ -0.15
USP28-204ENST00000537642 VPS39Q96JC1 886 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 CABS1Q96KC9 395 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 HIST1H2AHQ96KK5 128 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 IP6K3Q96PC2 410 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 HIST1H2AJQ99878 128 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 H2AFJQ9BTM1 129 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 SLC25A23Q9BV35 468 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 ZNF304Q9HCX3 659 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 ARL15Q9NXU5 204 aa14.1□□□□□ -0.15
USP28-204ENST00000537642 TCRBV9S1A1TA0A576 114 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 A6NL46 340 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 VSTM2BA6NLU5 285 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 URI1O94763 535 aaPredicted RBP14.09□□□□□ -0.15
USP28-204ENST00000537642 ENO2P09104 434 aaPredicted RBP14.09□□□□□ -0.15
USP28-204ENST00000537642 NPPBP16860 134 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 CCND1P24385 295 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 HRH2P25021 359 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 PGDP52209 483 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 RRADP55042 308 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 CSNK1G2P78368 415 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 SLC7A5Q01650 507 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 CAV1Q03135 178 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 KLRB1Q12918 225 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 PPP1R3AQ16821 1122 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 LCTLQ6UWM7 567 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 SHISA6Q6ZSJ9 500 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 C3orf62Q6ZUJ4 267 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 CYS1Q717R9 158 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 C17orf64Q86WR6 236 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 NKAPQ8N5F7 415 aaKnown RBP14.09□□□□□ -0.15
USP28-204ENST00000537642 FDCSPQ8NFU4 85 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 OR56A3Q8NH54 315 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 ANKRD49Q8WVL7 239 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 COL26A1Q96A83 441 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 FBXL8Q96CD0 374 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 TRIM54Q9BYV2 358 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 PHACTR1Q9C0D0 580 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 EPN3Q9H201 632 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 SOX17Q9H6I2 414 aaPredicted RBP14.09□□□□□ -0.15
USP28-204ENST00000537642 P4HTMQ9NXG6 502 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 MTO1Q9Y2Z2 717 aaKnown RBP14.09□□□□□ -0.15
USP28-204ENST00000537642 DOCK10Q96BY6 2186 aa14.09□□□□□ -0.15
USP28-204ENST00000537642 ESYT3A0FGR9 886 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 NPEPPSL1A6NEC2 478 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 FAM159BA6NKW6 160 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 MASP2O00187 686 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 CDC7O00311 574 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 PEX12O00623 359 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 WISP3O95389 354 aaPredicted RBP14.08□□□□□ -0.16
USP28-204ENST00000537642 GUCA1CO95843 209 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 STATHP02808 62 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 GSTA2P09210 222 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 CDH1P12830 882 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 FBLP22087 321 aaKnown RBP14.08□□□□□ -0.16
USP28-204ENST00000537642 MMP11P24347 488 aa14.08□□□□□ -0.16
USP28-204ENST00000537642 CASRP41180 1078 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms