RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 JPH3Q8WXH2 748 aaPredicted RBP12.58□□□□□ -0.4
CPNE3-205ENST00000522240 USP7Q93009 1102 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 UBE2E3Q969T4 207 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 REPS1Q96D71 796 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 C19orf60Q96EN9 201 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 MAELQ96JY0 434 aaKnown RBP12.58□□□□□ -0.4
CPNE3-205ENST00000522240 KCNA7Q96RP8 456 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 SLC38A3Q99624 504 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 ACAT2Q9BWD1 397 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 TMEM120AQ9BXJ8 343 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 KCNK13Q9HB14 408 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 ABCF3Q9NUQ8 709 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 DNAAF2Q9NVR5 837 aaKnown RBP12.58□□□□□ -0.4
CPNE3-205ENST00000522240 SPHK1Q9NYA1 384 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 ACTR10Q9NZ32 417 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.58□□□□□ -0.4
CPNE3-205ENST00000522240 DCTN4Q9UJW0 460 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 SNX6Q9UNH7 406 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 SH2B3Q9UQQ2 575 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 APOBEC2Q9Y235 224 aaKnown RBP12.58□□□□□ -0.4
CPNE3-205ENST00000522240 ARL2BPQ9Y2Y0 163 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 RNF11Q9Y3C5 154 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 FIS1Q9Y3D6 152 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 TSC22D4Q9Y3Q8 395 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 SDK1Q7Z5N4 2213 aa12.58□□□□□ -0.4
CPNE3-205ENST00000522240 SERTM1A2A2V5 107 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 RHPN2P1A8MT19 583 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 ISM1B1AKI9 464 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 PIP5K1BO14986 540 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 LRP3O75074 770 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 UBXN7O94888 489 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 ZNF806P0C7X5 589 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 PNLIPP16233 465 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 UGT2B7P16662 529 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 CXCR2P25025 360 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 GPR3P46089 330 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 CAPZBP47756 277 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 CCR8P51685 355 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 ATXN3P54252 364 aaPredicted RBP12.57□□□□□ -0.4
CPNE3-205ENST00000522240 SLBPQ14493 270 aaKnown RBP eCLIP12.57□□□□□ -0.4
CPNE3-205ENST00000522240 NR0B2Q15466 257 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 XKR7Q5GH72 579 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 LAPTM4BQ86VI4 370 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 FAM129CQ86XR2 697 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 MYLK4Q86YV6 388 aaPredicted RBP12.57□□□□□ -0.4
CPNE3-205ENST00000522240 KRT78Q8N1N4 520 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 ANKS4BQ8N8V4 417 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 FLVCR1-AS1Q8TAF5 88 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 THOC1Q96FV9 657 aaKnown RBP12.57□□□□□ -0.4
CPNE3-205ENST00000522240 SEC16BQ96JE7 1060 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 OR2A14Q96R47 310 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 AIF1LQ9BQI0 150 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 CCDC28BQ9BUN5 200 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 GTPBP2Q9BX10 602 aaKnown RBP12.57□□□□□ -0.4
CPNE3-205ENST00000522240 TBC1D10AQ9BXI6 508 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 NUF2Q9BZD4 464 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 RAB33BQ9H082 229 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 NT5DC2Q9H857 520 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 MRPS30Q9NP92 439 aaKnown RBP12.57□□□□□ -0.4
CPNE3-205ENST00000522240 POMT2Q9UKY4 750 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 TIMM22Q9Y584 194 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 PCDHGA11Q9Y5H2 935 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 KLK4Q9Y5K2 254 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 RNF215Q9Y6U7 377 aa12.57□□□□□ -0.4
CPNE3-205ENST00000522240 COL5A1P20908 1838 aaPredicted RBP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 A0A0J9YY10 115 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 LNP1A1A4G5 178 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 GSAPA4D1B5 854 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 MANBAO00462 879 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 TRIM38O00635 465 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 SDHDO14521 159 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 DIAPH2O60879 1101 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 VPS4BO75351 444 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 JUNP05412 331 aaKnown RBP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 PROS1P07225 676 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 HSD3B1P14060 373 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 POLR2CP19387 275 aaPredicted RBP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 HSD3B2P26439 372 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 GSTM2P28161 218 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 SERPINB1P30740 379 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 IDH3AP50213 366 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 HTR6P50406 440 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 GPLD1P80108 840 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 CSTF3Q12996 717 aaKnown RBP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 IFT88Q13099 833 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 PUM1Q14671 1186 aaKnown RBP eCLIP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 SUZ12Q15022 739 aaKnown RBP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 SF1Q15637 639 aaKnown RBP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 ZRSR2Q15696 482 aaKnown RBP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 CCDC6Q16204 474 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 CPSF6Q16630 551 aaKnown RBP eCLIP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 HIST2H2ACQ16777 129 aaPredicted RBP12.56□□□□□ -0.4
CPNE3-205ENST00000522240 SLC9B1Q4ZJI4 515 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 CATSPEREQ5SY80 951 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 FRG2Q64ET8 278 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 HIST2H2AA3Q6FI13 130 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 TCEAL6Q6IPX3 200 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 ZNF425Q6IV72 752 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 ARMC6Q6NXE6 501 aa12.56□□□□□ -0.4
CPNE3-205ENST00000522240 MED27Q6P2C8 311 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms