RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PARS2Q7L3T8 475 aaKnown RBP14.37□□□□□ -0.11
NUP54-217ENST00000514987 ZDHHC21Q8IVQ6 265 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 ARL10Q8N8L6 244 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 WDR34Q96EX3 536 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 EGLN2Q96KS0 407 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 MBOAT4Q96T53 435 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 DOK1Q99704 481 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 EFCAB11Q9BUY7 163 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 ASPSCR1Q9BZE9 553 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 GABARAPL1Q9H0R8 117 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 TM9SF3Q9HD45 589 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 ATXN10Q9UBB4 475 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 BAG5Q9UL15 447 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 CDH7Q9ULB5 785 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 PCDHB11Q9Y5F2 797 aa14.37□□□□□ -0.11
NUP54-217ENST00000514987 FOXE1O00358 373 aaPredicted RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 KPNA3O00505 521 aaPredicted RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 SCAMP2O15127 329 aaKnown RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 SLC16A6O15403 523 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 SCN2BO60939 215 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 DNAJB5O75953 348 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 SLC16A8O95907 504 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 CYP17A1P05093 508 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 EEF1B2P24534 225 aaKnown RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 ITGB7P26010 798 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 PCSK6P29122 969 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 IMPA1P29218 277 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 RPL3P39023 403 aaKnown RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 PREPP48147 710 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 RXRGP48443 463 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 WNT3P56703 355 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 GRSF1Q12849 480 aaKnown RBP eCLIP14.36□□□□□ -0.11
NUP54-217ENST00000514987 HIST2H2ACQ16777 129 aaPredicted RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 ZNF648Q5T619 568 aaPredicted RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 CPTPQ5TA50 214 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 HIST2H2AA3Q6FI13 130 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 ZCCHC8Q6NZY4 707 aaKnown RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 ZNF621Q6ZSS3 439 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 TMEM26Q6ZUK4 368 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 GRASPQ7Z6J2 395 aaPredicted RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 ZZZ3Q8IYH5 903 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 SETD9Q8NE22 299 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 OR7A2PQ8NGA2 310 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 PHOSPHO2Q8TCD6 241 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 CHTF18Q8WVB6 975 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 ZSWIM3Q96MP5 696 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 DUSP26Q9BV47 211 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 EBPLQ9BY08 206 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 EHD1Q9H4M9 534 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 SOX17Q9H6I2 414 aaPredicted RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 SMURF2Q9HAU4 748 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 IL1RAPQ9NPH3 570 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 ITM2CQ9NQX7 267 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 MRPS23Q9Y3D9 190 aaKnown RBP14.36□□□□□ -0.11
NUP54-217ENST00000514987 DYRK1BQ9Y463 629 aa14.36□□□□□ -0.11
NUP54-217ENST00000514987 NOTCH4Q99466 2003 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 EDDM13A0A1B0GTR0 161 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 C17orf113A0A1B0GUU1 675 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 TMEM202A6NGA9 273 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 NPC1O15118 1278 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 TLL1O43897 1013 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 HS6ST1O60243 411 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 ABCB7O75027 752 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 KCNK5O95279 499 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 C1orf105O95561 183 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 ABCB1P08183 1280 aaPredicted RBP14.35□□□□□ -0.11
NUP54-217ENST00000514987 ANXA4P09525 319 aaPredicted RBP14.35□□□□□ -0.11
NUP54-217ENST00000514987 ITGAMP11215 1152 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 RPL10P27635 214 aaKnown RBP14.35□□□□□ -0.11
NUP54-217ENST00000514987 KDELR2P33947 212 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 SHMT2P34897 504 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 RYKP34925 604 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 BDKRB1P46663 353 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 NTHL1P78549 312 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 PMS2P3Q13401 168 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 LAPTM5Q13571 262 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 DDX39BQ13838 428 aaKnown RBP14.35□□□□□ -0.11
NUP54-217ENST00000514987 GTF2H3Q13889 308 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 RAB39AQ14964 217 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 ZNF658BQ4V348 819 aaPredicted RBP14.35□□□□□ -0.11
NUP54-217ENST00000514987 SLC44A4Q53GD3 710 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 C6orf141Q5SZD1 244 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 OR2T5Q6IEZ7 315 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 PDE12Q6L8Q7 609 aaKnown RBP14.35□□□□□ -0.11
NUP54-217ENST00000514987 GALNT18Q6P9A2 607 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 SLCO4C1Q6ZQN7 724 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 OR7G3Q8NG95 312 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 OR2T29Q8NH02 315 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 MYLIPQ8WY64 445 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 OR8D1Q8WZ84 308 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 ARMC5Q96C12 935 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 COQ8BQ96D53 544 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 PPP1R16AQ96I34 528 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 OR4K3Q96R72 315 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 MTERF1Q99551 399 aaKnown RBP14.35□□□□□ -0.11
NUP54-217ENST00000514987 HSPE1-MOB4S4R3N1 261 aa14.35□□□□□ -0.11
NUP54-217ENST00000514987 NUP210Q8TEM1 1887 aaPredicted RBP14.35□□□□□ -0.11
NUP54-217ENST00000514987 LOC100130705A0A1B0GUX0 176 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 MGAT4DA6NG13 374 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 DPM1O60762 260 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms