RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 COLEC12Q5KU26 742 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 C8orf74Q6P047 294 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 MRGPREQ86SM8 312 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 CEP97Q8IW35 865 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 CSNK1A1LQ8N752 337 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 FKBP10Q96AY3 582 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 ACSS2Q9NR19 701 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 CTSFQ9UBX1 484 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 RUVBL1Q9Y265 456 aaKnown RBP23.55■■□□□ 1.36
UPF3A-209ENST00000492270 SCN3AQ9NY46 2000 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 TENM4Q6N022 2769 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 P2RX6O15547 441 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 SUV39H1O43463 412 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 ONECUT2O95948 504 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 C1QAP02745 245 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 STATHP02808 62 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 HIST1H2AGP0C0S8 130 aaPredicted RBP23.54■■□□□ 1.36
UPF3A-209ENST00000492270 HIST1H2ADP20671 130 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 CCL11P51671 97 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 CAV1Q03135 178 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 SSPNQ14714 243 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 SBSNQ6UWP8 590 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 SHISA6Q6ZSJ9 500 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 OVCH1Q7RTY7 1134 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 ANKRD49Q8WVL7 239 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 PYCR2Q96C36 320 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 CABS1Q96KC9 395 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 HIST1H2AHQ96KK5 128 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 HIST1H2AJQ99878 128 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 H2AFJQ9BTM1 129 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 SGPP1Q9BX95 441 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 ARL15Q9NXU5 204 aa23.54■■□□□ 1.36
UPF3A-209ENST00000492270 UTP6Q9NYH9 597 aaKnown RBP23.54■■□□□ 1.36
UPF3A-209ENST00000492270 MTO1Q9Y2Z2 717 aaKnown RBP23.54■■□□□ 1.36
UPF3A-209ENST00000492270 NPEPPSL1A6NEC2 478 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 CDC7O00311 574 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 GUCA1CO95843 209 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 NKG7Q16617 165 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 PPP1R3AQ16821 1122 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 TCTN3Q6NUS6 607 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 C3orf62Q6ZUJ4 267 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 PPP1R32Q7Z5V6 425 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 PDLIM5Q96HC4 596 aaKnown RBP23.53■■□□□ 1.36
UPF3A-209ENST00000492270 SPSB2Q99619 263 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 TRIM4Q9C037 500 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 PHACTR1Q9C0D0 580 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 CAB39LQ9H9S4 337 aa23.53■■□□□ 1.36
UPF3A-209ENST00000492270 SPENQ96T58 3664 aaKnown RBP23.52■■□□□ 1.36
UPF3A-209ENST00000492270 FAM159BA6NKW6 160 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 MASP2O00187 686 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 CD63P08962 238 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 PIM1P11309 404 aaPredicted RBP23.52■■□□□ 1.36
UPF3A-209ENST00000492270 AP1S2P56377 157 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 SNRPNP63162 240 aaKnown RBP23.52■■□□□ 1.36
UPF3A-209ENST00000492270 WHAMMP3Q1A5X7 153 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 MUM1Q2TAK8 710 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 LCTLQ6UWM7 567 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 RERGQ96A58 199 aaPredicted RBP23.52■■□□□ 1.36
UPF3A-209ENST00000492270 PTERQ96BW5 349 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 SLC26A1Q9H2B4 701 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 SOX17Q9H6I2 414 aaPredicted RBP23.52■■□□□ 1.36
UPF3A-209ENST00000492270 ZNF304Q9HCX3 659 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 TMEM184CQ9NVA4 438 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 DOCK10Q96BY6 2186 aa23.52■■□□□ 1.36
UPF3A-209ENST00000492270 PABPN1LA6NDY0 278 aaKnown RBP23.51■■□□□ 1.35
UPF3A-209ENST00000492270 J3QKU1 62 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 ALBP02768 609 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 CDH1P12830 882 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 MAGEA4P43358 317 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 CSNK1G2P78368 415 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 RELAQ04206 551 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 ASB18Q6ZVZ8 466 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 C17orf64Q86WR6 236 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 ARHGEF39Q8N4T4 335 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 NKAPQ8N5F7 415 aaKnown RBP23.51■■□□□ 1.35
UPF3A-209ENST00000492270 TMEM102Q8N9M5 508 aaPredicted RBP23.51■■□□□ 1.35
UPF3A-209ENST00000492270 CDKL2Q92772 493 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 COL26A1Q96A83 441 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 RBBP8Q99708 897 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 SLC25A23Q9BV35 468 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 TRIM54Q9BYV2 358 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 UNKQ9C0B0 810 aaKnown RBP23.51■■□□□ 1.35
UPF3A-209ENST00000492270 PCBD2Q9H0N5 130 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 WDR54Q9H977 334 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 LRRC4CQ9HCJ2 640 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 GPAMQ9HCL2 828 aa23.51■■□□□ 1.35
UPF3A-209ENST00000492270 FEZF1A0PJY2 475 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 FFAR3O14843 346 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 GPR42O15529 346 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 ENO2P09104 434 aaPredicted RBP23.5■■□□□ 1.35
UPF3A-209ENST00000492270 GSTA2P09210 222 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 NPPBP16860 134 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 CCND1P24385 295 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 KBTBD12Q3ZCT8 623 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 CAPN13Q6MZZ7 669 aaPredicted RBP23.5■■□□□ 1.35
UPF3A-209ENST00000492270 ATG14Q6ZNE5 492 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 MED25Q71SY5 747 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 VN1R4Q7Z5H5 301 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 OR56A3Q8NH54 315 aa23.5■■□□□ 1.35
UPF3A-209ENST00000492270 FBXL8Q96CD0 374 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms