RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SEPT7	Q16181	437 aa	Known RBP	8.44	□□□□□ -1.06
USP4-213	ENST00000488520	HECTD2	Q5U5R9	776 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	CACHD1	Q5VU97	1274 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	LRRC8E	Q6NSJ5	796 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	CROCCP2	Q86T23	111 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	KRT222	Q8N1A0	295 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	ZBTB2	Q8N680	514 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	CFAP61	Q8NHU2	1237 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	MAGEC3	Q8TD91	643 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	RSC1A1	Q92681	617 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	KCNJ9	Q92806	393 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	CAVIN3	Q969G5	261 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	TSNARE1	Q96NA8	513 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	FERD3L	Q96RJ6	166 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	SLC25A23	Q9BV35	468 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	RHOJ	Q9H4E5	214 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	ACTL8	Q9H568	366 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	ACSS3	Q9H6R3	686 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	8.44	□□□□□ -1.06
USP4-213	ENST00000488520	LHX9	Q9NQ69	397 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	KLHL42	Q9P2K6	505 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	SLC23A2	Q9UGH3	650 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	SLC39A10	Q9ULF5	831 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	PSMD13	Q9UNM6	376 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	DHRS7	Q9Y394	339 aa		8.44	□□□□□ -1.06
USP4-213	ENST00000488520	FAM95C	A0A1B0GW59	222 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	CCDC151	A5D8V7	595 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	LILRA5	A6NI73	299 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ARGFX	A6NJG6	315 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	CXorf49	A8MYA2	514 aa	Predicted RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	TCP11X1	B4DZS4	312 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	NIPSNAP2	O75323	286 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ALX3	O95076	343 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	SNRPA	P09012	282 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	CBSL	P0DN79	551 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	AOAH	P28039	575 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	NDUFS1	P28331	727 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	CRABP2	P29373	138 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	TYK2	P29597	1187 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	CCR7	P32248	378 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	CBS	P35520	551 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	HSD17B3	P37058	310 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	IL2	P60568	153 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	PPP1CA	P62136	330 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	UBE2I	P63279	158 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	DMPK	Q09013	629 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ABR	Q12979	859 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	NFE2L1	Q14494	772 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	IL11RA	Q14626	422 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	KCNAB1	Q14722	419 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ZNF789	Q5FWF6	425 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	MROH9	Q5TGP6	573 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	AGAP9	Q5VTM2	703 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	IRGC	Q6NXR0	463 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	WASH2P	Q6VEQ5	465 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	TMEM26	Q6ZUK4	368 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ZC3HC1	Q86WB0	502 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	PPP1R3B	Q86XI6	285 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ZNF547	Q8IVP9	402 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	APLF	Q8IW19	511 aa	Predicted RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	RBM12B	Q8IXT5	1001 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	MYO1H	Q8N1T3	1032 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	RAB42	Q8N4Z0	105 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	NKAP	Q8N5F7	415 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	AEN	Q8WTP8	325 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	NAT14	Q8WUY8	206 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	FAM136A	Q96C01	138 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	C12orf66	Q96MD2	445 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	BIRC8	Q96P09	236 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	NDN	Q99608	321 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	GPR21	Q99679	349 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	RBBP8	Q99708	897 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	WDR83	Q9BRX9	315 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	FUT8	Q9BYC5	575 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	TRIM54	Q9BYV2	358 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ROPN1B	Q9BZX4	212 aa	Predicted RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	WWP1	Q9H0M0	922 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	EPB41L1	Q9H4G0	881 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ZNF768	Q9H5H4	540 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	COG4	Q9H9E3	785 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ROPN1	Q9HAT0	212 aa	Predicted RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	WASH6P	Q9NQA3	447 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ACSS2	Q9NR19	701 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	LATS2	Q9NRM7	1088 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	ZNF624	Q9P2J8	865 aa	Predicted RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	POLG2	Q9UHN1	485 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	SLC24A2	Q9UI40	661 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	MTO1	Q9Y2Z2	717 aa	Known RBP	8.43	□□□□□ -1.06
USP4-213	ENST00000488520	PCDHGA6	Q9Y5G7	932 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	DOPEY1	Q5JWR5	2465 aa		8.43	□□□□□ -1.06
USP4-213	ENST00000488520	GOLGA6L10	A6NI86	522 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	OR52A4P	A6NMU1	304 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	RASGRF2	O14827	1237 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	ZBTB14	O43829	449 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	PIAS1	O75925	651 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	CLDN1	O95832	211 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	MT-ND3	P03897	115 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	FGF5	P12034	268 aa		8.42	□□□□□ -1.06

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms