RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 KCNE2Q9Y6J6 123 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 A0A087WV48 116 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 FAM159BA6NKW6 160 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 SMIM23A6NLE4 172 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 TARM1B6A8C7 271 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 MYO1CO00159 1063 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 EFSO43281 561 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 ZNF749O43361 778 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CCNT2O60583 730 aaKnown RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 SMIM24O75264 130 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 FGF5P12034 268 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 KRT15P19012 456 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CXCR2P25025 360 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 ITPKBP27987 946 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 PSMB5P28074 263 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 GRIA3P42263 894 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 HNMTP50135 292 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 TAS2R39P59534 338 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 TBPL1P62380 186 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 PHEXP78562 749 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 OCA2Q04671 838 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 RGS1Q08116 209 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 MAP7Q14244 749 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 TGIF1Q15583 401 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 HIST2H2ACQ16777 129 aaPredicted RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 MUM1Q2TAK8 710 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 C1orf189Q5VU69 101 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 ICE2Q659A1 982 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 HIST2H2AA3Q6FI13 130 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 ZDHHC24Q6UX98 284 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CDHR3Q6ZTQ4 885 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 TTLL10Q6ZVT0 673 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CYS1Q717R9 158 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 MCATQ8IVS2 390 aaKnown RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 KRT78Q8N1N4 520 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CCDC63Q8NA47 563 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 FBXO15Q8NCQ5 510 aaPredicted RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 OR2L3Q8NG85 312 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 GIMAP7Q8NHV1 300 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 STAG3L4Q8TBR4 150 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 PPP4R1Q8TF05 950 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.72□□□□□ -1.17
USP40-216ENST00000485943 PPM1MQ96MI6 270 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CATSPER2Q96P56 530 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 PAFAH2Q99487 392 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 GPR22Q99680 433 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 SLC30A3Q99726 388 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 DPH2Q9BQC3 489 aaPredicted RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 AIF1LQ9BQI0 150 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CENPKQ9BS16 269 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 SLC12A9Q9BXP2 914 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CAPS2Q9BXY5 557 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 UNKQ9C0B0 810 aaKnown RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 TWSG1Q9GZX9 223 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 ACSS3Q9H6R3 686 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 CPNE5Q9HCH3 593 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 LHX9Q9NQ69 397 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 EURLQ9NYK6 297 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 STOX2Q9P2F5 926 aaPredicted RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 FOXD3Q9UJU5 478 aaPredicted RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 CROTQ9UKG9 612 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 PDE10AQ9Y233 779 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 KLHL20Q9Y2M5 609 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 MTO1Q9Y2Z2 717 aaKnown RBP7.72□□□□□ -1.17
USP40-216ENST00000485943 PSAT1Q9Y617 370 aa7.72□□□□□ -1.17
USP40-216ENST00000485943 A0A088AWK7 358 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 TEX51A0A1B0GUA7 166 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 CDC14CA4D256 554 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 ANKDD1BA6NHY2 528 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 CXorf49A8MYA2 514 aaPredicted RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 C21orf140B9A014 251 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 H7BY64 318 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 GFYI3L273 518 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 PEX12O00623 359 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 ZNF500O60304 480 aaPredicted RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 SRPX2O60687 465 aaPredicted RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 ERLIN1O75477 346 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 TNFRSF21O75509 655 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 SNRPAP09012 282 aaKnown RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 EZRP15311 586 aaKnown RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 TFEBP19484 476 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 TAC1P20366 129 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 ZNF10P21506 573 aaPredicted RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 GABRB3P28472 473 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 DEKP35659 375 aaKnown RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 FOLR3P41439 243 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 AVPR1BP47901 424 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 CCR8P51685 355 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 GPX6P59796 221 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 RPS15AP62244 130 aaKnown RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 DCDP81605 110 aaKnown RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 RHDQ02161 417 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 TLE3Q04726 772 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 PRDX1Q06830 199 aaKnown RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 DNASE1L3Q13609 305 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 BMPR2Q13873 1038 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 ERV3-1Q14264 604 aa7.71□□□□□ -1.18
USP40-216ENST00000485943 FASTKQ14296 549 aaKnown RBP7.71□□□□□ -1.18
USP40-216ENST00000485943 EFTUD2Q15029 972 aaKnown RBP eCLIP7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms