RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SORDQ00796 357 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 YWHAHQ04917 246 aaPredicted RBP4.47□□□□□ -1.69
VPS50-214ENST00000477935 SMARCB1Q12824 385 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 CTF1Q16619 201 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 ARMCX5Q6P1M9 558 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 WDR73Q6P4I2 378 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 QSOX2Q6ZRP7 698 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 TAOK1Q7L7X3 1001 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 CUZD1Q86UP6 607 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 ARMC8Q8IUR7 673 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 EFCAB13Q8IY85 973 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 RFLNBQ8N5W9 214 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 MAB21L3Q8N8X9 362 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 WFIKKN2Q8TEU8 576 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 SORCS1Q8WY21 1168 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 MRPS31Q92665 395 aaKnown RBP4.47□□□□□ -1.69
VPS50-214ENST00000477935 TANKQ92844 425 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 TBATAQ96M53 351 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 SPRY4Q9C004 299 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 KCNN2Q9H2S1 579 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 C6orf50Q9HD87 102 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 PRMT7Q9NVM4 692 aaPredicted RBP4.47□□□□□ -1.69
VPS50-214ENST00000477935 CAMK2AQ9UQM7 478 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 NAALADL1Q9UQQ1 740 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 CCL26Q9Y258 94 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 SPG11Q96JI7 2443 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 F8P00451 2351 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 RP1L1Q8IWN7 2480 aaPredicted RBP4.47□□□□□ -1.69
VPS50-214ENST00000477935 MUC22E2RYF6 1773 aaPredicted RBP4.46□□□□□ -1.7
VPS50-214ENST00000477935 SMIM28A0A1B0GU29 152 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 A0A1B0GVC2 190 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 TMEM150BA6NC51 233 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 A6NLC8 198 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 HNRNPCL2B2RXH8 293 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 PRAC2D3DTV9 90 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 USP17L23D6RBM5 183 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 HIP1O00291 1037 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 TULP2O00295 520 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 SLC9A3R1O14745 358 aaPredicted RBP4.46□□□□□ -1.7
VPS50-214ENST00000477935 MSH4O15457 936 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 YKT6O15498 198 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 TIPRLO75663 272 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 PSMD10O75832 226 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 ZNF432O94892 652 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 HOXB5P09067 269 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 ATP1A3P13637 1013 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 KRT10P13645 584 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 RAD23BP54727 409 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 EMC2Q15006 297 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 ALG11Q2TAA5 492 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 DCAF4L1Q3SXM0 396 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 LINC00303Q3SY05 128 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 SLC45A4Q5BKX6 768 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 FAM122CQ6P4D5 195 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 UNQ6126/PRO20091Q6UXV3 157 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 CHERPQ8IWX8 916 aaKnown RBP4.46□□□□□ -1.7
VPS50-214ENST00000477935 C4orf19Q8IY42 314 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 NAGSQ8N159 534 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 ZNF441Q8N8Z8 693 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 NCOA7Q8NI08 942 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 C2orf15Q8WU43 125 aaKnown RBP4.46□□□□□ -1.7
VPS50-214ENST00000477935 ZUFSPQ96AP4 578 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 SKA1Q96BD8 255 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 SAAL1Q96ER3 474 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 SLC41A2Q96JW4 573 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 CNDP2Q96KP4 475 aaKnown RBP4.46□□□□□ -1.7
VPS50-214ENST00000477935 FAM110AQ9BQ89 295 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 UNC45AQ9H3U1 944 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 PPP1R3EQ9H7J1 279 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 TMEM206Q9H813 350 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 POLR1BQ9H9Y6 1135 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 EBF2Q9HAK2 575 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 BRF2Q9HAW0 419 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 BARHL2Q9NY43 387 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 WSB2Q9NYS7 404 aaPredicted RBP4.46□□□□□ -1.7
VPS50-214ENST00000477935 ANAPC2Q9UJX6 822 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 ERVK-11Q9UQG0 969 aa4.46□□□□□ -1.7
VPS50-214ENST00000477935 CELSR2Q9HCU4 2923 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 TDRD15B5MCY1 1934 aaKnown RBP4.45□□□□□ -1.7
VPS50-214ENST00000477935 ADAMTS9Q9P2N4 1935 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 TNRC6BQ9UPQ9 1833 aaKnown RBP4.45□□□□□ -1.7
VPS50-214ENST00000477935 IGHV4OR15-8A0A075B7B6 117 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 A0A0G2JPF8 293 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 A0A1W2PQF6 199 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 VPS37CA5D8V6 355 aaPredicted RBP4.45□□□□□ -1.7
VPS50-214ENST00000477935 CCDC69A6NI79 296 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 LRRC53A6NM62 1247 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 HNRNPCL3B7ZW38 293 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 B4GALT5O43286 388 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 HNRNPCL1O60812 293 aaKnown RBP4.45□□□□□ -1.7
VPS50-214ENST00000477935 KRT36O76013 467 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 PLEKHA8P1O95397 391 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 HNRNPCL4P0DMR1 293 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 DDX5P17844 614 aaKnown RBP4.45□□□□□ -1.7
VPS50-214ENST00000477935 EPHA8P29322 1005 aaPredicted RBP4.45□□□□□ -1.7
VPS50-214ENST00000477935 RBMS1P29558 406 aaKnown RBP4.45□□□□□ -1.7
VPS50-214ENST00000477935 GNA11P29992 359 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 YWHABP31946 246 aaKnown RBP4.45□□□□□ -1.7
VPS50-214ENST00000477935 CDAP32320 146 aa4.45□□□□□ -1.7
VPS50-214ENST00000477935 ARL2P36404 184 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms