RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 ADAMTSL2Q86TH1 951 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 CSNK1A1LQ8N752 337 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 ANKRD49Q8WVL7 239 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 THAP4Q8WY91 577 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 PYCR2Q96C36 320 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 MCMBPQ9BTE3 642 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 DERL2Q9GZP9 239 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 PTRH2Q9Y3E5 179 aaKnown RBP13.59□□□□□ -0.23
VAMP4-203ENST00000474047 IKBKGQ9Y6K9 419 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 IGSF10Q6WRI0 2623 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 MGAQ8IWI9 3026 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 HAT1O14929 419 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 ACSL3O95573 720 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 FURINP09958 794 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 RHOXF2BP0C7M4 288 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 FOLR3P41439 243 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 NFKB2Q00653 900 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 C19orf57Q0VDD7 668 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 EFTUD2Q15029 972 aaKnown RBP eCLIP13.59□□□□□ -0.23
VAMP4-203ENST00000474047 TSNQ15631 228 aaKnown RBP13.59□□□□□ -0.23
VAMP4-203ENST00000474047 ZNF385CQ66K41 422 aaPredicted RBP13.59□□□□□ -0.23
VAMP4-203ENST00000474047 LCTLQ6UWM7 567 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 SBSNQ6UWP8 590 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 PLD3Q8IV08 490 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 SPATA6LQ8N4H0 392 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 TBC1D19Q8N5T2 526 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 METTL27Q8N6F8 245 aaPredicted RBP13.59□□□□□ -0.23
VAMP4-203ENST00000474047 ZNF285Q96NJ3 590 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 RHOXF2Q9BQY4 288 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 SGPP1Q9BX95 441 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 UNKQ9C0B0 810 aaKnown RBP13.59□□□□□ -0.23
VAMP4-203ENST00000474047 ADNPQ9H2P0 1102 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 NINJ2Q9NZG7 142 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 DYRK1BQ9Y463 629 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 OARD1Q9Y530 152 aa13.59□□□□□ -0.23
VAMP4-203ENST00000474047 HEATR5BQ9P2D3 2071 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 FITM1A5D6W6 292 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 CAPN1P07384 714 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 CDH1P12830 882 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 NPPBP16860 134 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 CRABP2P29373 138 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 OTX2P32243 289 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 ATP6V0D1P61421 351 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 RPS15AP62244 130 aaKnown RBP13.58□□□□□ -0.24
VAMP4-203ENST00000474047 RELAQ04206 551 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 IL10RAQ13651 578 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 CSHL1Q14406 222 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 TBC1D1Q86TI0 1168 aaPredicted RBP13.58□□□□□ -0.24
VAMP4-203ENST00000474047 GPSM1Q86YR5 675 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 RAB43Q86YS6 212 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 EXD3Q8N9H8 876 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 OR56A3Q8NH54 315 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 YIPF2Q9BWQ6 316 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 TLK1Q9UKI8 766 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 IKZF3Q9UKT9 509 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 CDC14AQ9UNH5 594 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 KCNMB2Q9Y691 235 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 MAU2Q9Y6X3 613 aa13.58□□□□□ -0.24
VAMP4-203ENST00000474047 NCF1BA6NI72 391 aaPredicted RBP13.57□□□□□ -0.24
VAMP4-203ENST00000474047 NCF1CA8MVU1 366 aaPredicted RBP13.57□□□□□ -0.24
VAMP4-203ENST00000474047 S100BP04271 92 aaPredicted RBP13.57□□□□□ -0.24
VAMP4-203ENST00000474047 NCF1P14598 390 aaPredicted RBP13.57□□□□□ -0.24
VAMP4-203ENST00000474047 OR1D4P47884 311 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 HNMTP50135 292 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 CCR8P51685 355 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 CDKL1Q00532 357 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 KCNAB2Q13303 367 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 NDUFA9Q16795 377 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 FAM69BQ5VUD6 431 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 PRMT9Q6P2P2 845 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 RELL1Q8IUW5 271 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 OR2A5Q96R48 311 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 CDC42EP4Q9H3Q1 356 aaKnown RBP13.57□□□□□ -0.24
VAMP4-203ENST00000474047 ZNF304Q9HCX3 659 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 GEMIN8Q9NWZ8 242 aaKnown RBP13.57□□□□□ -0.24
VAMP4-203ENST00000474047 NFU1Q9UMS0 254 aa13.57□□□□□ -0.24
VAMP4-203ENST00000474047 PRPF4O43172 522 aaKnown RBP eCLIP13.56□□□□□ -0.24
VAMP4-203ENST00000474047 C1QAP02745 245 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 INHBAP08476 426 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 EMP3P54852 163 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 CSNK1G2P78368 415 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 OCA2Q04671 838 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 SSPNQ14714 243 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 PPP1R3AQ16821 1122 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 HKDC1Q2TB90 917 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 MROH9Q5TGP6 573 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 OVCH1Q7RTY7 1134 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 THOC6Q86W42 341 aaKnown RBP13.56□□□□□ -0.24
VAMP4-203ENST00000474047 FKBP10Q96AY3 582 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 PTERQ96BW5 349 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 THAP11Q96EK4 314 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 TSNARE1Q96NA8 513 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 SEMA4CQ9C0C4 833 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 ACSS3Q9H6R3 686 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 NMRAL1Q9HBL8 299 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 ACSS2Q9NR19 701 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 CD274Q9NZQ7 290 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 SH2B3Q9UQQ2 575 aa13.56□□□□□ -0.24
VAMP4-203ENST00000474047 RUVBL1Q9Y265 456 aaKnown RBP13.56□□□□□ -0.24
VAMP4-203ENST00000474047 ACOT9Q9Y305 439 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms