RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ARL11Q969Q4 196 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 RGMAQ96B86 450 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 C10orf71Q711Q0 1435 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 ISM1B1AKI9 464 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 H7C417 338 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 SCAMP3O14828 347 aaKnown RBP12.99□□□□□ -0.33
COL6A3-209ENST00000472056 FLRT2O43155 660 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 PROM1O43490 865 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 SCN2BO60939 215 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 RGS6P49758 472 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 PPP5CP53041 499 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 DPYSL2Q16555 572 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 GPAT4Q86UL3 456 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 CARM1Q86X55 608 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 POC1BQ8TC44 478 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 FN3KQ9H479 309 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 TMEM14AQ9Y6G1 99 aa12.99□□□□□ -0.33
COL6A3-209ENST00000472056 ITGB1P05556 798 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 GSTM2P28161 218 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 PTGIRP43119 386 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 Q8N402 240 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 METTL21AQ8WXB1 218 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 POPDC3Q9HBV1 291 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ACSL5Q9ULC5 683 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 MROH1Q8NDA8 1641 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 TRIP12Q14669 1992 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-209ENST00000472056 TBC1D3BA6NDS4 549 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 NAP1L6A6NFF2 107 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 RFPL2O75678 378 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 BNIP3Q12983 259 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 SCARB2Q14108 478 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ZSWIM9Q86XI8 627 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 PCDHB18PQ96TA0 734 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 IL25Q9H293 177 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 KIAA1217Q5T5P2 1943 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ADH1AP07327 375 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 MSX2P35548 267 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-209ENST00000472056 WSCD1Q658N2 575 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 PARP8Q8N3A8 854 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 OR51D1Q8NGF3 324 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 CYP2W1Q8TAV3 490 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 PAHP00439 452 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF630Q2M218 657 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-209ENST00000472056 C12orf40Q86WS4 652 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 LGI4Q8N135 537 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 FTMTQ8N4E7 242 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ARL14Q8N4G2 192 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ADARB2Q9NS39 739 aaKnown RBP12.98□□□□□ -0.33
COL6A3-209ENST00000472056 TEX51A0A1B0GUA7 166 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 B3GALT2O43825 422 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF155Q12901 538 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-209ENST00000472056 DUOXA1Q1HG43 343 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 PRRG4Q9BZD6 226 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 VPS29Q9UBQ0 182 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 AIPO00170 330 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 CLIC1O00299 241 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 CDKN2CP42773 168 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF157P51786 506 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-209ENST00000472056 TAS2R31P59538 309 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 GBE1Q04446 702 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 SLC15A3Q8IY34 581 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 HSPBAP1Q96EW2 488 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 ASPNQ9BXN1 380 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 RIMKLBQ9ULI2 386 aa12.98□□□□□ -0.33
COL6A3-209ENST00000472056 PIP5K1BO14986 540 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 NELFEP18615 380 aaKnown RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 CRYBB1P53674 252 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 UBAP2Q5T6F2 1119 aaKnown RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 AADACL2Q6P093 401 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 CHPT1Q8WUD6 406 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 CFAP97Q9P2B7 532 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 ADRB2P07550 413 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 RPS3P23396 243 aaKnown RBP eCLIP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 HCAR3P49019 387 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 CLCA4Q14CN2 919 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 BTBD16Q32M84 506 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 ISLR2Q6UXK2 745 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF627Q7L945 461 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 NUDT13Q86X67 352 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 PPTC7Q8NI37 304 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 ELP5Q8TE02 316 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 SIX4Q9UIU6 781 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 STMND1H3BQB6 276 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 TBL1XO60907 577 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 CILPO75339 1184 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 CRYZL1O95825 349 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 GLP1RP43220 463 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 RAB5CP51148 216 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 MRPS6P82932 125 aaKnown RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 TMEM53Q6P2H8 277 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 GRIN3AQ8TCU5 1115 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 GPATCH2Q9NW75 528 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 PCDHGA2Q9Y5H1 932 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 XRN1Q8IZH2 1706 aaKnown RBP12.97□□□□□ -0.33
COL6A3-209ENST00000472056 INSIG1O15503 277 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 FFAR2O15552 330 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 IRAK2O43187 625 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 MATN4O95460 622 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 CAPN3P20807 821 aa12.97□□□□□ -0.33
COL6A3-209ENST00000472056 VAMP1P23763 118 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms