RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TRPS1Q9UHF7 1281 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.59□□□□□ -0.554e-7■■■□□ 17.3
SMPD4-213ENST00000454468 TPST2O60704 377 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 FAM20BO75063 409 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 FADS2O95864 444 aaKnown RBP11.59□□□□□ -0.55
SMPD4-213ENST00000454468 SHMT2P34897 504 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 TP53BP2Q13625 1128 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 ZNF805Q5CZA5 627 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 TNFAIP8L2Q6P589 184 aaPredicted RBP11.59□□□□□ -0.55
SMPD4-213ENST00000454468 PSRC1Q6PGN9 363 aaPredicted RBP11.59□□□□□ -0.55
SMPD4-213ENST00000454468 PARS2Q7L3T8 475 aaKnown RBP11.59□□□□□ -0.55
SMPD4-213ENST00000454468 PATL1Q86TB9 770 aaKnown RBP11.59□□□□□ -0.55
SMPD4-213ENST00000454468 TMEM126BQ8IUX1 230 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 ZNF540Q8NDQ6 660 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 C17orf50Q8WW18 174 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 HSPBAP1Q96EW2 488 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 ZNF641Q96N77 438 aaPredicted RBP11.59□□□□□ -0.55
SMPD4-213ENST00000454468 TRIM39Q9HCM9 518 aa11.59□□□□□ -0.55
SMPD4-213ENST00000454468 J3QRK9 145 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 BCKDKO14874 412 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 KLK8O60259 260 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 ERAL1O75616 437 aaKnown RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 PFKLP17858 780 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 SH3BGRP55822 239 aaPredicted RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 CNTN1Q12860 1018 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 LSAMPQ13449 338 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 RAB39AQ14964 217 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 NKG7Q16617 165 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 BROXQ5VW32 411 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 DUS1LQ6P1R4 473 aaKnown RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 MRPL43Q8N983 215 aaKnown RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 OR8D1Q8WZ84 308 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 FBXL8Q96CD0 374 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 PDLIM5Q96HC4 596 aaKnown RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 PKP4Q99569 1192 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 MACROD1Q9BQ69 325 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 XKR8Q9H6D3 395 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 KRT84Q9NSB2 600 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 PPT2Q9UMR5 302 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 HS3ST2Q9Y278 367 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 GLOD5A6NK44 160 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 ERN1O75460 977 aaKnown RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 SCELO95171 688 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 PAK4O96013 591 aaPredicted RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 ENTPD1P49961 510 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 ALDH3A2P51648 485 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 TXNL4AP83876 142 aaKnown RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 HSPB3Q12988 150 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 SLC14A1Q13336 389 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 CYBRD1Q53TN4 286 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 FGD3Q5JSP0 725 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 CCNYL2Q5T2Q4 361 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 MED27Q6P2C8 311 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 LRRC70Q7Z2Q7 622 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 TMC8Q8IU68 726 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 BTN2A2Q8WVV5 523 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 ATL1Q8WXF7 558 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 EXOSC8Q96B26 276 aaKnown RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 CCM2Q9BSQ5 444 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 OSBPL6Q9BZF3 934 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 STOX2Q9P2F5 926 aaPredicted RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 M0R3G1 203 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 GREM1O60565 184 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 BCL10O95999 233 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 ADH1CP00326 375 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 HPCAL1P37235 193 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 NRIP1P48552 1158 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 NUDT6P53370 316 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 TAS2R50P59544 299 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 TBPL1P62380 186 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 CREMQ03060 361 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 ADIPOR2Q86V24 386 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 VANGL1Q8TAA9 524 aaPredicted RBP11.58□□□□□ -0.56
SMPD4-213ENST00000454468 CSGALNACT1Q8TDX6 532 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 TSPEARQ8WU66 669 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 NXPE3Q969Y0 559 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 PPCDCQ96CD2 204 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 ZSCAN5AQ9BUG6 496 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 SEZ6LQ9BYH1 1024 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 PRDM8Q9NQV8 689 aa11.58□□□□□ -0.56
SMPD4-213ENST00000454468 SLC9A3R1O14745 358 aaPredicted RBP11.57□□□□□ -0.56
SMPD4-213ENST00000454468 SLC31A1O15431 190 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 SUV39H1O43463 412 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 LATS1O95835 1130 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 ANGPTL1O95841 491 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 C6orf47O95873 294 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 CTSLP07711 333 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 PRPS1L1P21108 318 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 CLDN8P56748 225 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 MAPK11Q15759 364 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 INTS11Q5TA45 600 aaKnown RBP11.57□□□□□ -0.56
SMPD4-213ENST00000454468 LIPIQ6XZB0 460 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 AHSA2Q719I0 299 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 C12orf40Q86WS4 652 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 GTPBP3Q969Y2 492 aaKnown RBP11.57□□□□□ -0.56
SMPD4-213ENST00000454468 NUS1Q96E22 293 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 HSH2DQ96JZ2 352 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 KCNC2Q96PR1 638 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 NTMT1Q9BV86 223 aa11.57□□□□□ -0.56
SMPD4-213ENST00000454468 TAC3Q9UHF0 121 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms