RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 CMAHPQ9Y471 501 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 SLC12A8A0AV02 714 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 C17orf102A2RUQ5 167 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 AOC2O75106 756 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 HLA-DQB1P01920 261 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 CYP4B1P13584 511 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 RAB3AP20336 220 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 KELP23276 732 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 HOXA9P31269 272 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 BLVRAP53004 296 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 RABGGTBP53611 331 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 CRYBB1P53674 252 aaPredicted RBP18.64■□□□□ 0.57
HMGA1-205ENST00000447654 LILRA4P59901 499 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 RUNX1T1Q06455 604 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 ZNF273Q14593 569 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 SAXO2Q658L1 398 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 PAMR1Q6UXH9 720 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 GALNT10Q86SR1 603 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 ENTHD1Q8IYW4 607 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 PTGR2Q8N8N7 351 aaPredicted RBP18.64■□□□□ 0.57
HMGA1-205ENST00000447654 ZBTB44Q8NCP5 570 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 PYURFQ96I23 114 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 HRASLS5Q96KN8 279 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 TEKT5Q96M29 485 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 TNKS2Q9H2K2 1166 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 TREX1Q9NSU2 369 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 EVA1BQ9NVM1 165 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 CUEDC1Q9NWM3 386 aaPredicted RBP18.64■□□□□ 0.57
HMGA1-205ENST00000447654 AASSQ9UDR5 926 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 ACSL5Q9ULC5 683 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 STUB1Q9UNE7 303 aa18.64■□□□□ 0.57
HMGA1-205ENST00000447654 RPS10-NUDT3A0A1W2PQS6 291 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 A8MUA0 341 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 CLDN5O00501 218 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 HCN1O60741 890 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 BEST1O76090 585 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 CSF3P09919 207 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 PXNP49023 591 aaPredicted RBP18.63■□□□□ 0.57
HMGA1-205ENST00000447654 KCNQ1P51787 676 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 PDZK1Q5T2W1 519 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 LCN1P1Q5VSP4 162 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 OR52H1Q8NGJ2 320 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 RHEBL1Q8TAI7 183 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 CHTF18Q8WVB6 975 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 ST8SIA4Q92187 359 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 RBPMSQ93062 196 aaKnown RBP18.63■□□□□ 0.57
HMGA1-205ENST00000447654 ZNF599Q96NL3 588 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 PPP1R2P1Q96PQ5 205 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 APOL2Q9BQE5 337 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 PIGUQ9H490 435 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 HEBP1Q9NRV9 189 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 PRELID3BQ9Y3B1 194 aa18.63■□□□□ 0.57
HMGA1-205ENST00000447654 TNPO3Q9Y5L0 923 aaKnown RBP18.63■□□□□ 0.57
HMGA1-205ENST00000447654 A0A096LPI6 279 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 WASHC1A8K0Z3 465 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 PTP4A3O75365 173 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 CRCPO75575 148 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 C21orf33P30042 268 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 CLDN20P56880 219 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 IL1RL1Q01638 556 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 CREMQ03060 361 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 PCBP1Q15365 356 aaKnown RBP eCLIP18.62■□□□□ 0.574e-50■■■■■ 45.9
HMGA1-205ENST00000447654 CACHD1Q5VU97 1274 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 ESRP1Q6NXG1 681 aaKnown RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 PHC2Q8IXK0 858 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 FAM126BQ8IXS8 530 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 NLGN4YQ8NFZ3 816 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 KLHL15Q96M94 604 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 AP5M1Q9H0R1 490 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 RBFOX1Q9NWB1 397 aaKnown RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 UTS2RQ9UKP6 389 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 SNX8Q9Y5X2 465 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 ZNF98A6NK75 572 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 KHNYNO15037 678 aaKnown RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 ORC5O43913 435 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 ADAM11O75078 769 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 CREG1O75629 220 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 LGI1O95970 557 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 NPR3P17342 541 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 HOXB8P17481 243 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 HLA-FP30511 346 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 MAP2K3P46734 347 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 PITX1P78337 314 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 CYP4F3Q08477 520 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 SOWAHCQ53LP3 525 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 ZMAT1Q5H9K5 638 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 HECTD2Q5U5R9 776 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 OR2T5Q6IEZ7 315 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 DDX53Q86TM3 631 aaKnown RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 CCDC71Q8IV32 467 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-205ENST00000447654 OR2T29Q8NH02 315 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 GGHQ92820 318 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 SORCS2Q96PQ0 1159 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 ZIC5Q96T25 663 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 KRT84Q9NSB2 600 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 MAN2B2Q9Y2E5 1009 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 NEUROG3Q9Y4Z2 214 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 TRPM7Q96QT4 1865 aa18.62■□□□□ 0.57
HMGA1-205ENST00000447654 FAM220BPB1ANY3 271 aa18.61■□□□□ 0.57
HMGA1-205ENST00000447654 DFFAO00273 331 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms