RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 PRAP1Q96NZ9 151 aa16.31■□□□□ 0.2
COL7A1-202ENST00000422991 NSUN5Q96P11 429 aaKnown RBP16.31■□□□□ 0.2
COL7A1-202ENST00000422991 CMKLR1Q99788 373 aa16.31■□□□□ 0.2
COL7A1-202ENST00000422991 CAPS2Q9BXY5 557 aa16.31■□□□□ 0.2
COL7A1-202ENST00000422991 OCIAD1Q9NX40 245 aa16.31■□□□□ 0.2
COL7A1-202ENST00000422991 ANGPTL3Q9Y5C1 460 aa16.31■□□□□ 0.2
COL7A1-202ENST00000422991 MDC1Q14676 2089 aaKnown RBP16.31■□□□□ 0.2
COL7A1-202ENST00000422991 EPG5Q9HCE0 2579 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 PMS2P1A4D2B8 440 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 EFCAB7A8K855 629 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 HAT1O14929 419 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 CLGNO14967 610 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 MAP3K7O43318 606 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 PRAMEF4O60810 478 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 MSL3P1P0C860 447 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 DHRS4L1P0CG22 281 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 EZRP15311 586 aaKnown RBP16.3■□□□□ 0.2
COL7A1-202ENST00000422991 FOLR1P15328 257 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 ALDH3A1P30838 453 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 GABRA4P48169 554 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 RELAQ04206 551 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 PCDH1Q08174 1060 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 UNC50Q53HI1 259 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 TMTC4Q5T4D3 741 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 PRAMEF9Q5VWM5 478 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 LIPMQ5VYY2 423 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 ATG9BQ674R7 924 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 RPS27LQ71UM5 84 aaKnown RBP16.3■□□□□ 0.2
COL7A1-202ENST00000422991 ADCK2Q7Z695 626 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 FAM129CQ86XR2 697 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 DNAJC22Q8N4W6 341 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 WDR36Q8NI36 951 aaKnown RBP16.3■□□□□ 0.2
COL7A1-202ENST00000422991 MECRQ9BV79 373 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 EHD1Q9H4M9 534 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 ACSS2Q9NR19 701 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 PILRAQ9UKJ1 303 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 KLK13Q9UKR3 277 aa16.3■□□□□ 0.2
COL7A1-202ENST00000422991 B4E171 279 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 PLD2O14939 933 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 HCRTR1O43613 425 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 KATNA1O75449 491 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 BPGMP07738 259 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 C1GALT1C1LP0DN25 315 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 FGF3P11487 239 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-202ENST00000422991 CCL4P13236 92 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 HGFP14210 728 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 VARSP26640 1264 aaKnown RBP16.29■□□□□ 0.2
COL7A1-202ENST00000422991 TSPAN7P41732 249 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 SERPINB4P48594 390 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 REEP5Q00765 189 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 TUBB3Q13509 450 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 E2F2Q14209 437 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 GPR19Q15760 415 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 DEFB110Q30KQ9 67 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 C3orf38Q5JPI3 329 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 ANKRD42Q8N9B4 389 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 WDR34Q96EX3 536 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 ZFYVE21Q9BQ24 234 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 SELENOSQ9BQE4 189 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 SPNS1Q9H2V7 528 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 GSTO2Q9H4Y5 243 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 IPPKQ9H8X2 491 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 ZBTB26Q9HCK0 441 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 SATB2Q9UPW6 733 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 MSRB2Q9Y3D2 182 aa16.29■□□□□ 0.2
COL7A1-202ENST00000422991 MAP1BP46821 2468 aaKnown RBP16.28■□□□□ 0.2
COL7A1-202ENST00000422991 OR7A17O14581 309 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 TRIM13O60858 407 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 SUPT7LO94864 414 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 ITIH1P19827 911 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 CD22P20273 847 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 HPDP32754 393 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-202ENST00000422991 ETV5P41161 510 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 CASP2P42575 452 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 NAGLUP54802 743 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 MC2RQ01718 297 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 MEF2AQ02078 507 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-202ENST00000422991 IRF8Q02556 426 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 ACY1Q03154 408 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 ASPHQ12797 758 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 TRAF3Q13114 568 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 CHIT1Q13231 466 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 CAMK2BQ13554 666 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 DOC2AQ14183 400 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 SLBPQ14493 270 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL7A1-202ENST00000422991 TBCCQ15814 346 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 XKR6Q5GH73 641 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 FBXO42Q6P3S6 717 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 UNQ6494/PRO21346Q6UXR6 183 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 FRMD7Q6ZUT3 714 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 PLD3Q8IV08 490 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 CCNYL1Q8N7R7 359 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 ZNF740Q8NDX6 193 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 PPP4R1Q8TF05 950 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 MOCOSQ96EN8 888 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 PTCD3Q96EY7 689 aaKnown RBP16.28■□□□□ 0.2
COL7A1-202ENST00000422991 FCRL4Q96PJ5 515 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 OR6C1Q96RD1 312 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 AIF1LQ9BQI0 150 aa16.28■□□□□ 0.2
COL7A1-202ENST00000422991 EFCAB11Q9BUY7 163 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms