RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PCDHGA11Q9Y5H2 935 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 DNAH14Q0VDD8 3507 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 OR5K3A6NET4 321 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 PPP6CO00743 305 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 UBFD1O14562 309 aaKnown RBP13.69□□□□□ -0.22
SKA1-202ENST00000398452 PPM1DO15297 605 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 DUX1O43812 170 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 VPS4BO75351 444 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 CDH1P12830 882 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 ARRB2P32121 409 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 GRK6P43250 576 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 GPR3P46089 330 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 SF3A3Q12874 501 aaKnown RBP eCLIP13.69□□□□□ -0.22
SKA1-202ENST00000398452 DOC2AQ14183 400 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 SLBPQ14493 270 aaKnown RBP eCLIP13.69□□□□□ -0.22
SKA1-202ENST00000398452 PLA2G2CQ5R387 149 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 C10orf62Q5T681 223 aaPredicted RBP13.69□□□□□ -0.22
SKA1-202ENST00000398452 KANK2Q63ZY3 851 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 NXNQ6DKJ4 435 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 LETMD1Q6P1Q0 360 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 MED27Q6P2C8 311 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 C17orf82Q86X59 251 aaPredicted RBP13.69□□□□□ -0.22
SKA1-202ENST00000398452 SFTPA2Q8IWL1 248 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 SLC35F3Q8IY50 421 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 CACNA2D3Q8IZS8 1091 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 LMNTD1Q8N9Z9 388 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 L3MBTL4Q8NA19 623 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 LINC01555Q8NAE3 123 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 TWIST2Q8WVJ9 160 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 SELENOMQ8WWX9 145 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 APOLD1Q96LR9 279 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 OR4K3Q96R72 315 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 MENTQ9BUN1 341 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 NUF2Q9BZD4 464 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 NMRK1Q9NWW6 199 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 SNX7Q9UNH6 387 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 RNF11Q9Y3C5 154 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 TIMM22Q9Y584 194 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 PCDHGB2Q9Y5G2 931 aa13.69□□□□□ -0.22
SKA1-202ENST00000398452 CPED1A4D0V7 1026 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 BTN3A3O00478 584 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 FFAR3O14843 346 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 GPR42O15529 346 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 FLRT2O43155 660 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 RGS14O43566 566 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 SIGLEC6O43699 453 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 SNX3O60493 162 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 PCNAP12004 261 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 TYRP1P17643 537 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 CDH3P22223 829 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 PRDX3P30048 256 aaKnown RBP13.68□□□□□ -0.22
SKA1-202ENST00000398452 GPLD1P80108 840 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 RBBP5Q15291 538 aaKnown RBP13.68□□□□□ -0.22
SKA1-202ENST00000398452 ZRSR2Q15696 482 aaKnown RBP13.68□□□□□ -0.22
SKA1-202ENST00000398452 SLC5A12Q1EHB4 618 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 ZXDCQ2QGD7 858 aaPredicted RBP13.68□□□□□ -0.22
SKA1-202ENST00000398452 SGO1Q5FBB7 561 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 IRGCQ6NXR0 463 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 SLCO4C1Q6ZQN7 724 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 ADGRF3Q8IZF5 1079 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 FAM181AQ8N9Y4 354 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 OR2L3Q8NG85 312 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 OR2A1Q8NGT9 310 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 OR2I1PQ8NGU4 316 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 C19orf60Q96EN9 201 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 ZDHHC12Q96GR4 267 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 PPP1R36Q96LQ0 422 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 CNTNAP3BQ96NU0 1288 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 KCNA7Q96RP8 456 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 EDEM2Q9BV94 578 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 TMEM120AQ9BXJ8 343 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 CNTNAP3Q9BZ76 1288 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 PITHD1Q9GZP4 211 aaPredicted RBP13.68□□□□□ -0.22
SKA1-202ENST00000398452 TMEM9BQ9NQ34 198 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 TMEM184CQ9NVA4 438 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 ADGRE2Q9UHX3 823 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 ARL2BPQ9Y2Y0 163 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 RNF215Q9Y6U7 377 aa13.68□□□□□ -0.22
SKA1-202ENST00000398452 A0A0J9YY10 115 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 A0A1W2PPV9 198 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 LNP1A1A4G5 178 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 ANKDD1BA6NHY2 528 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 TMEM233B4DJY2 109 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 H7BY64 318 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 SLC28A1O00337 649 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 TRIM38O00635 465 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 PNLIPP16233 465 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 UGT2B7P16662 529 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 VARSP26640 1264 aaKnown RBP13.67□□□□□ -0.22
SKA1-202ENST00000398452 PSMB5P28074 263 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 SERPINB3P29508 390 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 SERPINB1P30740 379 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 CASP2P42575 452 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 CAPZBP47756 277 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 ZNF33BQ06732 778 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 PCDH1Q08174 1060 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 SLC14A1Q13336 389 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 DDX39BQ13838 428 aaKnown RBP13.67□□□□□ -0.22
SKA1-202ENST00000398452 CATSPEREQ5SY80 951 aa13.67□□□□□ -0.22
SKA1-202ENST00000398452 FRG2Q64ET8 278 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms