RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 DOCK9Q9BZ29 2069 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 DENRO43583 198 aaKnown RBP13.93□□□□□ -0.18
COL7A1-201ENST00000328333 RBMXP38159 391 aaKnown RBP13.93□□□□□ -0.18
COL7A1-201ENST00000328333 NUDT13Q86X67 352 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 TMEM68Q96MH6 324 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 PDCD2LQ9BRP1 358 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 SRRDQ9UH36 339 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 CAPN14A8MX76 684 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 RFPL2O75678 378 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 RASGRP1O95267 797 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 APOC3P02656 99 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 IMPDH1P20839 514 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 AKR1C8PQ5T2L2 129 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 C3orf33Q6P1S2 294 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 RHBDF2Q6PJF5 856 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 CARM1Q86X55 608 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 MARVELD2Q8N4S9 558 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF283Q8N7M2 679 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 GDPD1Q8N9F7 314 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 DNAJC19Q96DA6 116 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 INMT-MINDY4F8WBC2 141 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 MSCO60682 206 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 PAHP00439 452 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 WDR53Q7Z5U6 358 aaPredicted RBP13.93□□□□□ -0.18
COL7A1-201ENST00000328333 OR4K2Q8NGD2 314 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 SCN2AQ99250 2005 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 PRKXP51817 358 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 CDH11P55287 796 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 RPS14P62263 151 aaKnown RBP13.93□□□□□ -0.18
COL7A1-201ENST00000328333 PIGZQ86VD9 579 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF584Q8IVC4 421 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 NINJ1Q92982 152 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 MEGF6O75095 1541 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 HTR3EA5X5Y0 456 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 SULT1C2O00338 296 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 KLRC4O43908 158 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 ATE1O95260 518 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 CSTBP04080 98 aaKnown RBP13.93□□□□□ -0.18
COL7A1-201ENST00000328333 FCER2P06734 321 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 ICAM3P32942 547 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 MSANTD2Q6P1R3 559 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 TMED4Q7Z7H5 227 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 SLC45A3Q96JT2 553 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 FBXL21Q9UKT6 434 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 CIB4A0PJX0 185 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 ELOA3DA6NLF2 546 aaPredicted RBP13.93□□□□□ -0.18
COL7A1-201ENST00000328333 MASP1P48740 699 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 ELOA3BQ3SY89 546 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 TPGS1Q6ZTW0 290 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 CADM2Q8N3J6 435 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 ELOA3Q8NG57 546 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 NEIL3Q8TAT5 605 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 TMBIM1Q969X1 311 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 SLC22A18Q96BI1 424 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 KLHL15Q96M94 604 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 SLC35A5Q9BS91 424 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 RTFDC1Q9BY42 306 aaPredicted RBP13.93□□□□□ -0.18
COL7A1-201ENST00000328333 IL1R1P14778 569 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 RHOQP17081 205 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 DNASE1P24855 282 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 ATP4BP51164 291 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 NAE1Q13564 534 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 CLCA4Q14CN2 919 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 SAMD12Q8N8I0 201 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 COQ8AQ8NI60 647 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 COPS5Q92905 334 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 CGREF1Q99674 301 aa13.93□□□□□ -0.18
COL7A1-201ENST00000328333 PAK1IP1Q9NWT1 392 aaPredicted RBP13.93□□□□□ -0.18
COL7A1-201ENST00000328333 OR6C75A6NL08 312 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 PIP5K1BO14986 540 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 NRG1Q02297 640 aaPredicted RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 WSCD1Q658N2 575 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 SVBPQ8N300 66 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 BEST4Q8NFU0 473 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 ARL5BQ96KC2 179 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 CHD5Q8TDI0 1954 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 POLR1CO15160 346 aaPredicted RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 SNAPINO95295 136 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 HMGN3Q15651 99 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 OR4K3Q96R72 315 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 EIF5A2Q9GZV4 153 aaKnown RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 RPH3AQ9Y2J0 694 aaPredicted RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 TEX13DA0A0J9YY54 714 aaPredicted RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 IFNA5P01569 189 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 ENDOUP21128 410 aaKnown RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 CCKBRP32239 447 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 EXOSC8Q96B26 276 aaKnown RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 PLD4Q96BZ4 506 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 MALSU1Q96EH3 234 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 MRPL17Q9NRX2 175 aaKnown RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 GPSM3Q9Y4H4 160 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 TCRBV5S4A2TA0A5A2 114 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 PAN2Q504Q3 1202 aaKnown RBP13.92□□□□□ -0.18
COL7A1-201ENST00000328333 AADACL2Q6P093 401 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 SPATA6LQ8N4H0 392 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 STXBP5LQ9Y2K9 1186 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 PI15O43692 258 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 ITM2AO43736 263 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 COQ9O75208 318 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 IL1BP01584 269 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms