RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 TMTC4Q5T4D3 741 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 SCIMPQ6UWF3 145 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 RASGRP3Q8IV61 690 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 LILRA3Q8N6C8 439 aaPredicted RBP12.66□□□□□ -0.38
CPNE1-201ENST00000317677 SIMC1Q8NDZ2 872 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 OR56A4Q8NGH8 313 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 OR2T11Q8NH01 316 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 GLYATL1Q969I3 302 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 VPS33AQ96AX1 596 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 SLC45A3Q96JT2 553 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 RDH14Q9HBH5 336 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 PDE10AQ9Y233 779 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 EIF3LQ9Y262 564 aaKnown RBP12.66□□□□□ -0.38
CPNE1-201ENST00000317677 UGT2A1Q9Y4X1 527 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 ATG2BQ96BY7 2078 aa12.66□□□□□ -0.38
CPNE1-201ENST00000317677 CROCCQ5TZA2 2017 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 OR2AG2A6NM03 316 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 H0Y858 1186 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 WNT9AO14904 365 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 INPP4BO15327 924 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 MBTPS2O43462 519 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 MLYCDO95822 493 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 C6P13671 934 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 ENO3P13929 434 aaPredicted RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 WASP42768 502 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 NR4A2P43354 598 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 RAD23AP54725 363 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 GTF2H2Q13888 395 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 BOP1Q14137 746 aaKnown RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 SQLEQ14534 574 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 SMAD2Q15796 467 aaKnown RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 CRY1Q16526 586 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 ZNF284Q2VY69 593 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 C2orf27AQ580R0 203 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 XKR7Q5GH72 579 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 GTF2H2CQ6P1K8 395 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 GPRIN3Q6ZVF9 776 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 USP51Q70EK9 711 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 DSG4Q86SJ6 1040 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 YAF2Q8IY57 180 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 NRSN1Q8IZ57 195 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 ASCC1Q8N9N2 400 aaKnown RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 OR9I1Q8NGQ6 314 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 UBTD2Q8WUN7 234 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 FKBP10Q96AY3 582 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 MSLNLQ96KJ4 702 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 DOCK9Q9BZ29 2069 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 MMP20O60882 483 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 GPC4O75487 556 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 RECQL5O94762 991 aaPredicted RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 EPHX1P07099 455 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 CKMT2P17540 419 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 EPORP19235 508 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 ITIH1P19827 911 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 MSH3P20585 1137 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 S100A5P33763 92 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 EIF2DP41214 584 aaKnown RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 CLK3P49761 638 aaKnown RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 DNASE1L3Q13609 305 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 ENPP2Q13822 863 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 ZNF658BQ4V348 819 aaPredicted RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 SPRED1Q7Z699 444 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 FUNDC1Q8IVP5 155 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 ADHFE1Q8IWW8 467 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 DDIASQ8IXT1 998 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 SFRP1Q8N474 314 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 CDYL2Q8N8U2 506 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 Q8N9G6 341 aaPredicted RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 OR4F6Q8NGB9 312 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 SUSD6Q92537 303 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 TRIM63Q969Q1 353 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 C9orf16Q9BUW7 83 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 NUSAP1Q9BXS6 441 aaKnown RBP12.65□□□□□ -0.38
CPNE1-201ENST00000317677 CD244Q9BZW8 370 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 RAD18Q9NS91 495 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 MRGBPQ9NV56 204 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 GULP1Q9UBP9 304 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 KCNN3Q9UGI6 736 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 STON1Q9Y6Q2 735 aa12.65□□□□□ -0.38
CPNE1-201ENST00000317677 TSPAN6O43657 245 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 UGT2B11O75310 529 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 BCAS1O75363 584 aaPredicted RBP12.64□□□□□ -0.39
CPNE1-201ENST00000317677 AP2A2O94973 939 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 MPC1LP0DKB6 136 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 UROSP10746 265 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 GPX3P22352 226 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 DRD3P35462 400 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 NUDT1P36639 197 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 CAPGP40121 348 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 P2RY2P41231 377 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 CNTN1Q12860 1018 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 NEDD8Q15843 81 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 ITPRIPL2Q3MIP1 535 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 TMEM52BQ4KMG9 183 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 PLEKHS1Q5SXH7 462 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 PIP5KL1Q5T9C9 394 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 SULT1C3Q6IMI6 304 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 ERN2Q76MJ5 926 aaKnown RBP12.64□□□□□ -0.39
CPNE1-201ENST00000317677 SLC22A16Q86VW1 577 aa12.64□□□□□ -0.39
CPNE1-201ENST00000317677 SLC38A6Q8IZM9 456 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms