RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 GOLGA7Q7Z5G4 137 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 SATL1Q86VE3 508 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 GSTCDQ8NEC7 633 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 TSPAN14Q8NG11 270 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 DCAKDQ8WVC6 231 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 NSMCE3Q96MG7 304 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 PSKH2Q96QS6 385 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 GJD2Q9UKL4 321 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 SSR3Q9UNL2 185 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 RSL1D1O76021 490 aaKnown RBP13.12□□□□□ -0.31
RFFL-201ENST00000315249 IMPDH1P20839 514 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 DRD4P21917 467 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 IDH3AP50213 366 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 HDDC2Q7Z4H3 204 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 CHST14Q8NCH0 376 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 SHISA4Q96DD7 197 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 TOE1Q96GM8 510 aaKnown RBP13.12□□□□□ -0.31
RFFL-201ENST00000315249 ZNF184Q99676 751 aaPredicted RBP13.12□□□□□ -0.31
RFFL-201ENST00000315249 TRIM39Q9HCM9 518 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 ARL8BQ9NVJ2 186 aa13.12□□□□□ -0.31
RFFL-201ENST00000315249 IGKV6-21A0A0C4DH24 114 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 RENP00797 406 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 PRPS1L1P21108 318 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 RBBP4Q09028 425 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 ITGADQ13349 1161 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 SHHQ15465 462 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 TMPRSS11AQ6ZMR5 421 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 DNAJA3Q96EY1 480 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 GORASP1Q9BQQ3 440 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 RNF11Q9Y3C5 154 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 TCEA3O75764 348 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 VLDLRP98155 873 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 NCEH1Q6PIU2 408 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 LRRC69Q6ZNQ3 347 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 ZCCHC7Q8N3Z6 543 aaKnown RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 OR4F6Q8NGB9 312 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 GADD45GO95257 159 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 CLDN2P57739 230 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 ERVFC1P60507 584 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 RAB14P61106 215 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 SCARB2Q14108 478 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 DEFB133Q30KQ1 61 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 KIAA1161Q6NSJ0 714 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 FIBINQ8TAL6 211 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 C1GALT1C1Q96EU7 318 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 GPATCH1Q9BRR8 931 aaKnown RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 MTG2Q9H4K7 406 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 PCDHGA2Q9Y5H1 932 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 VIRMAQ69YN4 1812 aaKnown RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 A6NL46 340 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 NPC1O15118 1278 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 LYNP07948 512 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 DBTP11182 482 aaKnown RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 C4BPBP20851 252 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 RAB28P51157 221 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 GALK1P51570 392 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 ANKRD26P1Q6NSI1 321 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 Q6ZSR6 202 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 AMIGO1Q86WK6 493 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 TCEAL8Q8IYN2 117 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 TDHQ8IZJ6 230 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 NKD1Q969G9 470 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 BRD7Q9NPI1 651 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 HIDE1A8MVS5 230 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 ENTPD5O75356 428 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 KRT36O76013 467 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 KLHL18O94889 574 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 HNRNPA2B1P22626 353 aaKnown RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 MYBPC3Q14896 1274 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 PDSS1Q5T2R2 415 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 LRRC46Q96FV0 321 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 EHD3Q9NZN3 535 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 OAS3Q9Y6K5 1087 aaKnown RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 MAU2Q9Y6X3 613 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 BCHEP06276 602 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 CBLP22681 906 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 STC1P52823 247 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 ZNF234Q14588 700 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 NOXRED1Q6NXP6 359 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 GLB1L3Q8NCI6 653 aaPredicted RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 CLPTM1LQ96KA5 538 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 DCBLD2Q96PD2 775 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 FBRSL1Q9HCM7 1045 aaKnown RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 CHMP1AQ9HD42 196 aaPredicted RBP13.11□□□□□ -0.31
RFFL-201ENST00000315249 RARRES3Q9UL19 164 aa13.11□□□□□ -0.31
RFFL-201ENST00000315249 FEZF1A0PJY2 475 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 TARDBPQ13148 414 aaKnown RBP eCLIP13.1□□□□□ -0.312e-6■■■■□ 22.6
RFFL-201ENST00000315249 GPR65Q8IYL9 337 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 KBTBD7Q8WVZ9 684 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 ZNF717Q9BY31 904 aaPredicted RBP13.1□□□□□ -0.31
RFFL-201ENST00000315249 PTGES2Q9H7Z7 377 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 TMEM138Q9NPI0 162 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 NDUFA13Q9P0J0 144 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.1□□□□□ -0.31
RFFL-201ENST00000315249 MBLAC1A4D2B0 266 aaPredicted RBP13.1□□□□□ -0.31
RFFL-201ENST00000315249 CPNE3O75131 537 aaKnown RBP13.1□□□□□ -0.31
RFFL-201ENST00000315249 ACRV1P26436 265 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 ACADLP28330 430 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 ZNF311Q5JNZ3 666 aa13.1□□□□□ -0.31
RFFL-201ENST00000315249 PLEKHS1Q5SXH7 462 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms