RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 OR4N4Q8N0Y3 316 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 CCDC177Q9NQR7 707 aaPredicted RBP22.86■■□□□ 1.25
SHMT1-206ENST00000579558 NSMCE4AQ9NXX6 385 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 CDC23Q9UJX2 597 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 PTRH2Q9Y3E5 179 aaKnown RBP22.86■■□□□ 1.25
SHMT1-206ENST00000579558 ZNF462Q96JM2 2506 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 TLN1Q9Y490 2541 aaKnown RBP22.85■■□□□ 1.25
SHMT1-206ENST00000579558 HEATR5BQ9P2D3 2071 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 SLC28A2O43868 658 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 KLF7O75840 302 aaPredicted RBP22.85■■□□□ 1.25
SHMT1-206ENST00000579558 DNAJB5O75953 348 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 SAT1P21673 171 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 FOLR3P41439 243 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 PLTPP55058 493 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 TBPL1P62380 186 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 CHAF1BQ13112 559 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 LACTB2Q53H82 288 aaPredicted RBP22.85■■□□□ 1.25
SHMT1-206ENST00000579558 CPZQ66K79 652 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 ZNF425Q6IV72 752 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 MBOAT1Q6ZNC8 495 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 ADCK2Q7Z695 626 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 PTRH1Q86Y79 214 aaKnown RBP22.85■■□□□ 1.25
SHMT1-206ENST00000579558 RAB43Q86YS6 212 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 TRIM55Q9BYV6 548 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 SLC22A11Q9NSA0 550 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 TLK1Q9UKI8 766 aa22.85■■□□□ 1.25
SHMT1-206ENST00000579558 FAM95CA0A1B0GW59 222 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 HYKKA2RU49 373 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 PABPN1LA6NDY0 278 aaKnown RBP22.84■■□□□ 1.25
SHMT1-206ENST00000579558 H0YGG7 62 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 URI1O94763 535 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-206ENST00000579558 HIST1H2AGP0C0S8 130 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-206ENST00000579558 PIM1P11309 404 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-206ENST00000579558 HIST1H2ADP20671 130 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 ITGAXP20702 1163 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 SSTR1P30872 391 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 OTX2P32243 289 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 ARF3P61204 181 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-206ENST00000579558 CAV1Q03135 178 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 PHKG1Q16816 387 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 PRAMEF13Q5VWM6 474 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 MRPL14Q6P1L8 145 aaKnown RBP22.84■■□□□ 1.25
SHMT1-206ENST00000579558 HIST1H2AHQ96KK5 128 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 HIST1H2AJQ99878 128 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 H2AFJQ9BTM1 129 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 ING2Q9H160 280 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 ACSS2Q9NR19 701 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 CUEDC1Q9NWM3 386 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-206ENST00000579558 TP53TG5Q9Y2B4 290 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 CCDC88CQ9P219 2028 aa22.84■■□□□ 1.25
SHMT1-206ENST00000579558 ANKRD12Q6UB98 2062 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 CNOT3O75175 753 aaKnown RBP22.83■■□□□ 1.25
SHMT1-206ENST00000579558 EZRP15311 586 aaKnown RBP22.83■■□□□ 1.25
SHMT1-206ENST00000579558 SSPNQ14714 243 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 AGTRAPQ6RW13 159 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 METTL27Q8N6F8 245 aaPredicted RBP22.83■■□□□ 1.25
SHMT1-206ENST00000579558 OR2Y1Q8NGV0 311 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 FBXO25Q8TCJ0 367 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 ZDHHC19Q8WVZ1 309 aaPredicted RBP22.83■■□□□ 1.25
SHMT1-206ENST00000579558 FKBP10Q96AY3 582 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 TRIM54Q9BYV2 358 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 PCBD2Q9H0N5 130 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 ATG10Q9H0Y0 220 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 SMYD2Q9NRG4 433 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 SPTA1P02549 2419 aa22.83■■□□□ 1.25
SHMT1-206ENST00000579558 PIAS1O75925 651 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 FOXL2P58012 376 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 NAE1Q13564 534 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 ATP1A4Q13733 1029 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 OVCH1Q7RTY7 1134 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 CCDC25Q86WR0 208 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 CSNK1A1LQ8N752 337 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 ZNF592Q92610 1267 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 CDKL2Q92772 493 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 RERGQ96A58 199 aaPredicted RBP22.82■■□□□ 1.24
SHMT1-206ENST00000579558 ALKBH8Q96BT7 664 aaKnown RBP22.82■■□□□ 1.24
SHMT1-206ENST00000579558 PHACTR1Q9C0D0 580 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 RHOJQ9H4E5 214 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 ARL15Q9NXU5 204 aa22.82■■□□□ 1.24
SHMT1-206ENST00000579558 H7BY64 318 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 HAT1O14929 419 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 MED26O95402 600 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 ONECUT2O95948 504 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 ZNF37AP17032 561 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-206ENST00000579558 NR1D1P20393 614 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 OR1D4P47884 311 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 CCL11P51671 97 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 AP1S2P56377 157 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 TAS2R39P59534 338 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 RELAQ04206 551 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 TRADDQ15628 312 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 WHAMMP3Q1A5X7 153 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 MUM1Q2TAK8 710 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 PRTGQ2VWP7 1150 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 TCTN3Q6NUS6 607 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 C8orf74Q6P047 294 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 TMEM207Q6UWW9 146 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 COX15Q7KZN9 410 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 DTWD1Q8N5C7 304 aa22.81■■□□□ 1.24
SHMT1-206ENST00000579558 PTERQ96BW5 349 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms