RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 AGTRAPQ6RW13 159 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 KCTD8Q6ZWB6 473 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 RTL10Q7L3V2 364 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 THAP5Q7Z6K1 395 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 SERPINA11Q86U17 422 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 SYT12Q8IV01 421 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 KLHDC8AQ8IYD2 350 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 OR5K1Q8NHB7 308 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 HCAR2Q8TDS4 363 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 ATL1Q8WXF7 558 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 NELL1Q92832 810 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 GLMNQ92990 594 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 GLYATL1Q969I3 302 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 TMEM159Q96B96 161 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 OTUB2Q96DC9 234 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 LRIG1Q96JA1 1093 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 ZSWIM3Q96MP5 696 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 EBPLQ9BY08 206 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 REXO4Q9GZR2 422 aaKnown RBP9.77□□□□□ -0.85
VPS53-220ENST00000576149 POLR1BQ9H9Y6 1135 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 DKK3Q9UBP4 350 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 EBF1Q9UH73 591 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 PLXNA2O75051 1894 aa9.77□□□□□ -0.85
VPS53-220ENST00000576149 ZBBXA8MT70 800 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 E7EQ34 232 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 H0YIV9 168 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 NOBOXO60393 691 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CCNDBP1O95273 360 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 XPAP23025 273 aaPredicted RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 DCTP40126 519 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 WNT3P56703 355 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 PCDH1Q08174 1060 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 DOC2AQ14183 400 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 RAB39AQ14964 217 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 COL19A1Q14993 1142 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 DUOXA1Q1HG43 343 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 SYTL3Q4VX76 610 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CES5AQ6NT32 575 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 SPESP1Q6UW49 350 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 TMEM179BQ7Z7N9 219 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 C8orf59Q8N0T1 100 aaPredicted RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 EID3Q8N140 333 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 OR7A2PQ8NGA2 310 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 ZNF420Q8TAQ5 688 aaPredicted RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 C12orf43Q96C57 262 aaKnown RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 C11orf24Q96F05 449 aaPredicted RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 PAWRQ96IZ0 340 aaKnown RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 DOK1Q99704 481 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 AMBRA1Q9C0C7 1298 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 ING2Q9H160 280 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 OCEL1Q9H607 264 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 STOX2Q9P2F5 926 aaPredicted RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 RABL2AQ9UBK7 228 aaPredicted RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 FBXO10Q9UK96 956 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CDC14AQ9UNH5 594 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 SSUH2Q9Y2M2 353 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 SLC5A10A0PJK1 596 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 EVPLLA8MZ36 301 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 B4GAT1O43505 415 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 ATG13O75143 517 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CPNE6O95741 557 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 DCKP27707 260 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 MMP12P39900 470 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 HNF4AP41235 474 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 MAGEA2P43356 314 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 PREPP48147 710 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 PRLHRP49683 370 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 C21orf58P58505 322 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 VAC14Q08AM6 782 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 NAE1Q13564 534 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CCSMST1Q4G0I0 132 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 GRHL2Q6ISB3 625 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 ZNF773Q6PK81 442 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 LIPIQ6XZB0 460 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CHST15Q7LFX5 561 aaPredicted RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 UBE2Q1Q7Z7E8 422 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CHPFQ8IZ52 775 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 PGBD3Q8N328 593 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 LILRA3Q8N6C8 439 aaPredicted RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 ZNF555Q8NEP9 628 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 OR8J2Q8NGG1 315 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 FOXJ1Q92949 421 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 METTL2AQ96IZ6 378 aaKnown RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 OR4K3Q96R72 315 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 PANX1Q96RD7 426 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 MTERF1Q99551 399 aaKnown RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 TUBA1CQ9BQE3 449 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CCM2Q9BSQ5 444 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 C11orf49Q9H6J7 331 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 IL23AQ9NPF7 189 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 AASDHPPTQ9NRN7 309 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 ATXN10Q9UBB4 475 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 TMCC3Q9ULS5 477 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 SAMD4AQ9UPU9 718 aaKnown RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 RUVBL1Q9Y265 456 aaKnown RBP9.76□□□□□ -0.85
VPS53-220ENST00000576149 INSL6Q9Y581 213 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 PCDHGA8Q9Y5G5 932 aa9.76□□□□□ -0.85
VPS53-220ENST00000576149 CLIC1O00299 241 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 FPGTO14772 594 aa9.75□□□□□ -0.85
VPS53-220ENST00000576149 NPC1O15118 1278 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms