RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 BASP1P80723 227 aaKnown RBP16.05■□□□□ 0.16
CLN3-211ENST00000564091 TSTA3Q13630 321 aaPredicted RBP16.05■□□□□ 0.16
CLN3-211ENST00000564091 HKDC1Q2TB90 917 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 RPUSD3Q6P087 351 aaKnown RBP16.05■□□□□ 0.16
CLN3-211ENST00000564091 SPNS2Q8IVW8 549 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 SIRT6Q8N6T7 355 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 OR9A1PQ8NGU1 263 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 LPGAT1Q92604 370 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 TAAR6Q96RI8 345 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 IL22Q9GZX6 179 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 MRPS30Q9NP92 439 aaKnown RBP16.05■□□□□ 0.16
CLN3-211ENST00000564091 EIF2B3Q9NR50 452 aaKnown RBP16.05■□□□□ 0.16
CLN3-211ENST00000564091 SYBUQ9NX95 663 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 BFARQ9NZS9 450 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 TRPC4Q9UBN4 977 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 RUVBL1Q9Y265 456 aaKnown RBP16.05■□□□□ 0.16
CLN3-211ENST00000564091 MDC1Q14676 2089 aaKnown RBP16.04■□□□□ 0.16
CLN3-211ENST00000564091 CCDC88CQ9P219 2028 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 IGKV1-8A0A0C4DH67 115 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 ARHGEF33A8MVX0 844 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 IDSB3KWA1 339 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 MATN4O95460 622 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 SERPINA7P05543 415 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 STSP08842 583 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 CHRM3P20309 590 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 CXCR2P25025 360 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 TNFRSF8P28908 595 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 NPY2RP49146 381 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 TNFSF10P50591 281 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 SRSF11Q05519 484 aaKnown RBP16.04■□□□□ 0.16
CLN3-211ENST00000564091 GBX1Q14549 363 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 SIX1Q15475 284 aaPredicted RBP16.04■□□□□ 0.16
CLN3-211ENST00000564091 ANKRD20A4Q4UJ75 823 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 ACSBG2Q5FVE4 666 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 SP5Q6BEB4 398 aaPredicted RBP16.04■□□□□ 0.16
CLN3-211ENST00000564091 MRNIPQ6NTE8 343 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 SDCCAG8Q86SQ7 713 aaPredicted RBP16.04■□□□□ 0.16
CLN3-211ENST00000564091 PAQR7Q86WK9 346 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 RNF10Q8N5U6 811 aaKnown RBP16.04■□□□□ 0.16
CLN3-211ENST00000564091 CSNK1A1LQ8N752 337 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 MARVELD3Q96A59 401 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 PLCD4Q9BRC7 762 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 TRIM56Q9BRZ2 755 aaKnown RBP16.04■□□□□ 0.16
CLN3-211ENST00000564091 KIFC1Q9BW19 673 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 CDC14AQ9UNH5 594 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 CRYL1Q9Y2S2 319 aa16.04■□□□□ 0.16
CLN3-211ENST00000564091 DIDO1Q9BTC0 2240 aaKnown RBP16.03■□□□□ 0.16
CLN3-211ENST00000564091 IGHV1-45A0A0A0MS14 117 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 DYTNA2CJ06 578 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 HEXBP07686 556 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 ERGP11308 486 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 RPA3P35244 121 aaPredicted RBP16.03■□□□□ 0.16
CLN3-211ENST00000564091 TERF1P54274 439 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 DSG2Q14126 1118 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 CCNG2Q16589 344 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 SYT16Q17RD7 645 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 ZNF324BQ6AW86 544 aaPredicted RBP16.03■□□□□ 0.16
CLN3-211ENST00000564091 LRRC8BQ6P9F7 803 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 SLC34A3Q8N130 599 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 SMPDL3AQ92484 453 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 MMABQ96EY8 250 aaPredicted RBP16.03■□□□□ 0.16
CLN3-211ENST00000564091 PKP4Q99569 1192 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 ABCF3Q9NUQ8 709 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 TAC3Q9UHF0 121 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 GUCA1BQ9UMX6 200 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 ENTPD4Q9Y227 616 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 ANKRD12Q6UB98 2062 aa16.03■□□□□ 0.16
CLN3-211ENST00000564091 A0A0A6YYC8 382 aaPredicted RBP16.02■□□□□ 0.16
CLN3-211ENST00000564091 TRAV17A0A0B4J275 112 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 A0A1B0GUH1 482 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 TCRBV7S3A2A0A539 114 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 PRSS44E7EML9 344 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 I3L1I5 382 aaPredicted RBP16.02■□□□□ 0.16
CLN3-211ENST00000564091 MYO1CO00159 1063 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 PCDH17O14917 1159 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 HNRNPRO43390 633 aaKnown RBP16.02■□□□□ 0.16
CLN3-211ENST00000564091 VPS26AO75436 327 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 SNRNP200O75643 2136 aaKnown RBP16.02■□□□□ 0.16
CLN3-211ENST00000564091 WFS1O76024 890 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 ESR1P03372 595 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 UQCRHP07919 91 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 F7P08709 466 aaPredicted RBP16.02■□□□□ 0.16
CLN3-211ENST00000564091 SLC26A3P40879 764 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 KCNJ1P48048 391 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 TDGF1P3P51864 188 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 EMP3P54852 163 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 MAT1AQ00266 395 aaKnown RBP16.02■□□□□ 0.16
CLN3-211ENST00000564091 NAA25Q14CX7 972 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 RPS6KA1Q15418 735 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 TYSND1Q2T9J0 566 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 KLHL38Q2WGJ6 581 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 GSTA5Q7RTV2 222 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 AMER3Q8N944 861 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 SPC24Q8NBT2 197 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 PPFIBP2Q8ND30 876 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 NR4A3Q92570 626 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 HAS2Q92819 552 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 OR2A5Q96R48 311 aa16.02■□□□□ 0.16
CLN3-211ENST00000564091 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.02■□□□□ 0.16
CLN3-211ENST00000564091 DRG1Q9Y295 367 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms