RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FPGTO14772 594 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 SMAD6O43541 496 aaKnown RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 KCNK5O95279 499 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 DLGAP3O95886 979 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 NUDT7P0C024 238 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 CYBAP13498 195 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 HOXB9P17482 250 aaPredicted RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 ACRV1P26436 265 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 GTF2E2P29084 291 aaKnown RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 KDELR2P33947 212 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 EIF2DP41214 584 aaKnown RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 KIR3DL1P43629 444 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 PPP5CP53041 499 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 NUDT6P53370 316 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 PRSS48Q7RTY5 328 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ARMC8Q8IUR7 673 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ENTHD1Q8IYW4 607 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 POC5Q8NA72 575 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 FAM83FQ8NEG4 500 aaPredicted RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 PIH1D2Q8WWB5 315 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 SPATA17Q96L03 361 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 BCL7BQ9BQE9 202 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLN3-210ENST00000563874 RETREG1Q9H6L5 497 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 REEP1Q9H902 201 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 SIAEQ9HAT2 523 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 OSGIN1Q9UJX0 560 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 LOC100506127A0A0U1RQW1 187 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 AIREO43918 545 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 TBL1XO60907 577 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ANXA5P08758 320 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 BPIP17213 487 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ITPKAP23677 461 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 GRK3P35626 688 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 CASP9P55211 416 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 CXCR4P61073 352 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 HSPA14Q0VDF9 509 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 NPRL3Q12980 569 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 VMACQ2NL98 169 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ADGRF1Q5T601 910 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 TSPAN33Q86UF1 283 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 TSPYL5Q86VY4 417 aaPredicted RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 Q8N9G6 341 aaPredicted RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 MINDY2Q8NBR6 621 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 PSD4Q8NDX1 1056 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 WFDC5Q8TCV5 224 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ELMO1Q92556 727 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 MAL2Q969L2 176 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 COPS4Q9BT78 406 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 GABARAPL1Q9H0R8 117 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ASIC5Q9NY37 505 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 ANKMY1Q9P2S6 941 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 AP3M1Q9Y2T2 418 aa12.82□□□□□ -0.36
CLN3-210ENST00000563874 CAB39Q9Y376 341 aaPredicted RBP12.82□□□□□ -0.36
CLN3-210ENST00000563874 GLYATL1P3A0A0U1RQE8 302 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 C2orf78A6NCI8 922 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 ZNF840PA6NDX5 716 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 INPPL1O15357 1258 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 IL1RNP18510 177 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 GADD45AP24522 165 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 CYP4F2P78329 520 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 CAMK2GQ13555 558 aaPredicted RBP12.81□□□□□ -0.36
CLN3-210ENST00000563874 SMU1Q2TAY7 513 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 HECTD3Q5T447 861 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 STEAP3Q658P3 488 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 ANKS3Q6ZW76 656 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 LYSMD2Q8IV50 215 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 P3H2Q8IVL5 708 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 ZZZ3Q8IYH5 903 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 SCAIQ8N9R8 606 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 ARHGAP39Q9C0H5 1083 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 MBD1Q9UIS9 605 aaPredicted RBP12.81□□□□□ -0.36
CLN3-210ENST00000563874 ATP11BQ9Y2G3 1177 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 PDE4DIPQ5VU43 2346 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 BNIP3LO60238 219 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 EOMESO95936 686 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 SPNP16150 400 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 HNF1BP35680 557 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 DDX39BQ13838 428 aaKnown RBP12.81□□□□□ -0.36
CLN3-210ENST00000563874 PLEKHG6Q3KR16 790 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 MAMSTRQ6ZN01 415 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 CEP295NLQ96MC4 621 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 ITPAQ9BY32 194 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 ATG10Q9H0Y0 220 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 SLC32A1Q9H598 525 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 RUBCNLQ9H714 662 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 NMRK2Q9NPI5 230 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 FAM8A1Q9UBU6 413 aa12.81□□□□□ -0.36
CLN3-210ENST00000563874 GLTPD2A6NH11 291 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 M0R129 80 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 PRAMEF4O60810 478 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 ADAMTS4O75173 837 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 UPK1BO75841 260 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 IGHA2P01877 340 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 NTRK1P04629 796 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 TNFRSF1BP20333 461 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 RPS3P23396 243 aaKnown RBP eCLIP12.8□□□□□ -0.364e-6■■□□□ 12.9
CLN3-210ENST00000563874 TRIM71Q2Q1W2 868 aaKnown RBP12.8□□□□□ -0.36
CLN3-210ENST00000563874 PROX2Q3B8N5 592 aa12.8□□□□□ -0.36
CLN3-210ENST00000563874 PTCHD3Q3KNS1 767 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms