RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 VPS4BO75351 444 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ANP32DO95626 131 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ANXA6P08133 673 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 NCF2P19878 526 aaPredicted RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 PSMB5P28074 263 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 GPR18Q14330 331 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 PLCL1Q15111 1095 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 SGO1Q5FBB7 561 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 PEAR1Q5VY43 1037 aaPredicted RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 TMEM198Q66K66 360 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 GRHL2Q6ISB3 625 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 Q6ZSR9 355 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 SLC9B2Q86UD5 537 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 C17orf64Q86WR6 236 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 OR2A1Q8NGT9 310 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 TUBGCP3Q96CW5 907 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 MTFMTQ96DP5 389 aaKnown RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 HBEGFQ99075 208 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ELF4Q99607 663 aaPredicted RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 EFCAB11Q9BUY7 163 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 SRMSQ9H3Y6 488 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ELOVL6Q9H5J4 265 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 AKTIPQ9H8T0 292 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 SAR1AQ9NR31 198 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 FARSBQ9NSD9 589 aaKnown RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 RIC8BQ9NVN3 520 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 UCKL1Q9NWZ5 548 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ZNF490Q9ULM2 529 aaPredicted RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 PCDHB11Q9Y5F2 797 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 NCOR1O75376 2440 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ZDBF2Q9HCK1 2354 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 FAM86C2PA6NEL3 165 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 H0YIV9 168 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 SLC28A1O00337 649 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 PRICKLE3O43900 615 aaPredicted RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 CHRM5P08912 532 aaPredicted RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 CDH1P12830 882 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 RXRGP48443 463 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ARRB1P49407 418 aaPredicted RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 YBX1P67809 324 aaKnown RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 HHEXQ03014 270 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 PRDX1Q06830 199 aaKnown RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 BIRC2Q13490 618 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 DEFB133Q30KQ1 61 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 PAGE2BQ5JRK9 111 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 FRG2Q64ET8 278 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 TRIM46Q7Z4K8 759 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 RBM12BQ8IXT5 1001 aaKnown RBP10.82□□□□□ -0.68
USP3-218ENST00000560202 OR2T11Q8NH01 316 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ZFAND2BQ8WV99 257 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 SELENOMQ8WWX9 145 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 FRG2BQ96QU4 278 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 SPHK1Q9NYA1 384 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 ARMCX1Q9P291 453 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 PCDHGA2Q9Y5H1 932 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 PCDHGA11Q9Y5H2 935 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 THADAQ6YHU6 1953 aa10.82□□□□□ -0.68
USP3-218ENST00000560202 A6NHS1 94 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 BTN3A3O00478 584 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 RGS14O43566 566 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 NOBOXO60393 691 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 PEX11AO75192 247 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 UBOX5O94941 541 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 PDYNP01213 254 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 PRR35P0CG20 571 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 NQO1P15559 274 aaKnown RBP10.81□□□□□ -0.68
USP3-218ENST00000560202 LBPP18428 481 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 PEBP1P30086 187 aaKnown RBP10.81□□□□□ -0.68
USP3-218ENST00000560202 HOXD12P35452 270 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 DPP6P42658 865 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 NEK2P51955 445 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 ZNF33BQ06732 778 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 BNIP3Q12983 259 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 LAPTM5Q13571 262 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 UBAP2LQ14157 1087 aaKnown RBP10.81□□□□□ -0.68
USP3-218ENST00000560202 SLBPQ14493 270 aaKnown RBP eCLIP10.81□□□□□ -0.68
USP3-218ENST00000560202 SHBQ15464 509 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 HIST2H2ACQ16777 129 aaPredicted RBP10.81□□□□□ -0.68
USP3-218ENST00000560202 DUOXA1Q1HG43 343 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 GALNTL6Q49A17 601 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 FAM91A1Q658Y4 838 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 HIST2H2AA3Q6FI13 130 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 MED27Q6P2C8 311 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 OGFOD3Q6PK18 319 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 PRR23BQ6ZRT6 265 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 TMEM26Q6ZUK4 368 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 CHSY3Q70JA7 882 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 ADGRF3Q8IZF5 1079 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 ARL14Q8N4G2 192 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 AVL9Q8NBF6 648 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 ABHD11Q8NFV4 315 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 OR7G3Q8NG95 312 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 WDR20Q8TBZ3 569 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 CATSPER2Q96P56 530 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 RAB3IPQ96QF0 476 aaPredicted RBP10.81□□□□□ -0.68
USP3-218ENST00000560202 TWSG1Q9GZX9 223 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 PELI2Q9HAT8 420 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 SLC24A3Q9HC58 644 aa10.81□□□□□ -0.68
USP3-218ENST00000560202 CUEDC1Q9NWM3 386 aaPredicted RBP10.81□□□□□ -0.68
USP3-218ENST00000560202 GIMAP2Q9UG22 337 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms